Pavir.J13538 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J13538 T196765_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN

NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.867 0.972
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR

YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.867 0.972
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN

NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.867 0.972
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN

NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.862 0.944
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN

NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.847 0.861
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY

RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.847 0.861
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN

NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.843 0.861
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.843 0.861
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN

NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.838 0.806
GATA1
M01998_2.00
Arabidopsis thaliana
NNNVATBNNN

NNNVATBNNN
PBM
Weirauch et al.(2014)
pTH8144
0.832 0.833
GATA1
M06887_2.00
Arabidopsis thaliana
RYGRTGRTGRTGRTG

CAYCAYCAYCAYCRY
Dap-seq
OMalley et al.(2016)
GATA1_col_a
0.832 0.833
GATA1
M06888_2.00
Arabidopsis thaliana
HNYAGATCYRRWYB

VRWYYRGATCTRND
Dap-seq
OMalley et al.(2016)
GATA1_colamp_a
0.832 0.833
GATA6
M01999_2.00
Arabidopsis thaliana
NVRATVNDNN

NNHNBATYBN
PBM
Weirauch et al.(2014)
pTH7317
0.832 0.778
GATA6
M06890_2.00
Arabidopsis thaliana
YAGATCTARAWNH

DNWTYTAGATCTR
Dap-seq
OMalley et al.(2016)
GATA6_col200_a
0.832 0.778
GATA10
M01994_2.00
Arabidopsis thaliana
CAGATCTA

TAGATCTG
PBM
Weirauch et al.(2014)
pTH7615
0.823 0.833
GATA11
M01995_2.00
Arabidopsis thaliana
CAGATCTH

DAGATCTG
PBM
Weirauch et al.(2014)
pTH7486
0.823 0.833
GATA11
M06882_2.00
Arabidopsis thaliana
HYYAGATCYRRWWHH

DDWWYYRGATCTRRD
Dap-seq
OMalley et al.(2016)
GATA11_col_a
0.823 0.833
GATA7
M02004_2.00
Arabidopsis thaliana
NNNNATNNNN

NNNNATNNNN
PBM
Weirauch et al.(2014)
pTH7658
0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13538.1.p GATA 162 197

Links

Other GATA family TFs
Other Panicum virgatum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPT15 Saccharomyces cerevisiae YER148W D 0.000
UCRPA7_763 Togninia minima UCRPA7_763 I 0.000
THOM_0429 Trachipleistophora hominis THOM_0429 I 0.000
TESG_08364 Trichophyton tonsurans TESG_08364 I 0.000
TBLA_0B08050 Tetrapisispora blattae TBLA_0B08050 I 0.000
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.000
sr13595 Sporisorium reilianum sr13595 I 0.000
SPBR_06113 Sporothrix brasiliensis SPBR_06113 I 0.000
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.000
SNOG_06135 Phaeosphaeria nodorum SNOG_06135 I 0.000
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.000
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.000
Si023295m.g Setaria italica Si023295m.g I 0.000
TPHA_0A02110 Tetrapisispora phaffii TPHA_0A02110 I 0.000
Traes_1AL_60B57FD46 Triticum aestivum Traes_1AL_60B57FD46 I 0.000
UCREL1_11678 Eutypa lata UCREL1_11678 I 0.000
TRV_02367 Trichophyton verrucosum TRV_02367 I 0.000
TRIVIDRAFT_89322 Trichoderma virens TRIVIDRAFT_89322 I 0.000
TRIUR3_32346 Triticum urartu TRIUR3_32346 I 0.000
TRIREDRAFT_49918 Trichoderma reesei TRIREDRAFT_49918 I 0.000
TRIATDRAFT_300545 Trichoderma atroviride TRIATDRAFT_300545 I 0.000
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.000
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.000
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.000
Traes_1BS_2CB2C53C1 Triticum aestivum Traes_1BS_2CB2C53C1 I 0.000
Traes_1BL_2CB2C53C1 Triticum aestivum Traes_1BL_2CB2C53C1 I 0.000
SEPMUDRAFT_150420 Sphaerulina musiva SEPMUDRAFT_150420 I 0.000
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.000
SELMODRAFT_270329 Selaginella moellendorffii SELMODRAFT_270329 I 0.000
PV04_08198 Capronia semiimmersa PV04_08198 I 0.000
PSEUBRA_SCAF4g05047 Pseudozyma brasiliensis PSEUBRA_SCAF4g05047 I 0.000
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.000
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.000
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.000
PHSY_006238 Pseudozyma hubeiensis PHSY_006238 I 0.000
PDE_04702 Penicillium oxalicum PDE_04702 I 0.000
PAS_chr1-4_0183 Komagataella pastoris PAS_chr1-4_0183 I 0.000
PAN0_004d2209 Pseudozyma antarctica PAN0_004d2209 I 0.000
PaG_04811 Pseudozyma aphidis PaG_04811 I 0.000
OS10G0432300 Oryza sativa OS10G0432300 I 0.000
PV05_09095 Exophiala xenobiotica PV05_09095 I 0.000
PV06_02313 Exophiala oligosperma PV06_02313 I 0.000
PV07_11953 Cladophialophora immunda PV07_11953 I 0.000
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.000
SELMODRAFT_163230 Selaginella moellendorffii SELMODRAFT_163230 I 0.000
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.000
SAPIO_CDS8115 Scedosporium apiospermum SAPIO_CDS8115 I 0.000
S40288_06427 Stachybotrys chartarum S40288_06427 I 0.000
S40285_04799 Stachybotrys chlorohalonata S40285_04799 I 0.000
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.000
PV11_06323 Exophiala sideris PV11_06323 I 0.000
PV10_01351 Exophiala mesophila PV10_01351 I 0.000
PV09_01314 Verruconis gallopava PV09_01314 I 0.000
PV08_11625 Exophiala spinifera PV08_11625 I 0.000
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.000
UHOR_03923 Ustilago hordei UHOR_03923 I 0.000
XP_002490297.1 Pichia pastoris XP_002490297.1 I 0.000
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.000
MDP0000289755 Malus domestica MDP0000289755 I 0.000
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.000
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I 0.000
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.000
gene01591-v1.0-hybrid Fragaria vesca gene01591-v1.0-hybrid I 0.000
Carubv10014676m.g Capsella rubella Carubv10014676m.g I 0.000
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.000
Cagra.0690s0017 Capsella grandiflora Cagra.0690s0017 I 0.000
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.000
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.000
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.000
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 0.000
Pavir.J18057 Panicum virgatum Pavir.J18057 I 0.000
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I 0.000
estExt_Genewise1.C_160112 Tremella mesenterica estExt_Genewise1.C_160112 I 0.000
6631_YER148W Saccharomyces bayanus 6631_YER148W I 0.000
6417_YER148W Saccharomyces paradoxus 6417_YER148W I 0.000
6284_YER148W Saccharomyces mikatae 6284_YER148W I 0.000
Scas_Contig555.3 Saccharomyces castellii Scas_Contig555.3 I 0.000
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.000
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.000
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.000
SapurV1A.0680s0010 Salix purpurea SapurV1A.0680s0010 I 0.000
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.000
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.000
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.000
Pm000066 Prunus mume Pm000066 I 0.000
ZYRO0G14806g Zygosaccharomyces rouxii ZYRO0G14806g I 0.000
ZBAI_07023 Zygosaccharomyces bailii ZBAI_07023 I 0.000
ZBAI_02629 Zygosaccharomyces bailii ZBAI_02629 I 0.000
Z519_05345 Cladophialophora bantiana Z519_05345 I 0.000
Z518_06724 Rhinocladiella mackenziei Z518_06724 I 0.000
Z517_03367 Fonsecaea pedrosoi Z517_03367 I 0.000
X797_000575 Metarhizium robertsii X797_000575 I 0.000
VDAG_01612 Verticillium dahliae VDAG_01612 I 0.000
VCUG_02118 Vavraia culicis VCUG_02118 I 0.000
V499_02736 Pseudogymnoascus pannorum V499_02736 I 0.000
29950.m001154 Ricinus communis 29950.m001154 I 0.000
cassava22625.valid.m1 Manihot esculenta cassava22625.valid.m1 I 0.000
cassava35684.valid.m1 Manihot esculenta cassava35684.valid.m1 I 0.000
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I 0.000
mgf012506m Mimulus guttatus mgf012506m I 0.000
mgf012063m Mimulus guttatus mgf012063m I 0.000
mgf009543m Mimulus guttatus mgf009543m I 0.000
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.000
estExt_Genewise1Plus.C_sca_2_chr3_3_00895 Nectria haematococca estExt_Genewise1Plus.C_sca_2_chr3_3_00895 I 0.000
estExt_Genewise1Plus.C_chr_20175 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_20175 I 0.000
estExt_fgenesh1_pg.C_80243 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_80243 I 0.000
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.000
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.000
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.000
UM02394 Ustilago maydis UM02394 I 0.000
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.000
FVEG_02094 Fusarium verticillioides FVEG_02094 I 0.000
CPC735_006990 Coccidioides posadasii CPC735_006990 I 0.000
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.000
Cob_07704 Colletotrichum orbiculare Cob_07704 I 0.000
CMQ_6369 Grosmannia clavigera CMQ_6369 I 0.000
CMQ_1115 Grosmannia clavigera CMQ_1115 I 0.000
CHLREDRAFT_144556 Chlamydomonas reinhardtii CHLREDRAFT_144556 I 0.000
CGGC5_5917 Colletotrichum gloeosporioides CGGC5_5917 I 0.000
CFIO01_08112 Colletotrichum fioriniae CFIO01_08112 I 0.000
CCM_04604 Cordyceps militaris CCM_04604 I 0.000
CAGL0I06688g Candida glabrata CAGL0I06688g I 0.000
CAD25333 Encephalitozoon cuniculi CAD25333 I 0.000
CPUR_03526 Claviceps purpurea CPUR_03526 I 0.000
CSUB01_05142 Colletotrichum sublineola CSUB01_05142 I 0.000
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.000
FPSE_05036 Fusarium pseudograminearum FPSE_05036 I 0.000
FOXG_03223 Fusarium oxysporum FOXG_03223 I 0.000
FGRRES_08427 Fusarium graminearum FGRRES_08427 I 0.000
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.000
FFUJ_06086 Fusarium fujikuroi FFUJ_06086 I 0.000
F775_26897 Aegilops tauschii F775_26897 I 0.000
Eint_041450 Encephalitozoon intestinalis Eint_041450 I 0.000
EDEG_01170 Edhazardia aedis EDEG_01170 I 0.000
EBI_26482 Enterocytozoon bieneusi EBI_26482 I 0.000
DOTSEDRAFT_46328 Dothistroma septosporum DOTSEDRAFT_46328 I 0.000
DI09_319p10 Microsporidia sp DI09_319p10 I 0.000
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.000
BRADI3G27190 Brachypodium distachyon BRADI3G27190 I 0.000
Bra030855 Brassica rapa Bra030855 I 0.000
TBP2 Arabidopsis thaliana AT1G55520 I 0.000
ACRE_027850 Acremonium chrysogenum ACRE_027850 I 0.000
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.000
A1O9_01972 Exophiala aquamarina A1O9_01972 I 0.000
A1O7_07711 Cladophialophora yegresii A1O7_07711 I 0.000
A1O5_09235 Cladophialophora psammophila A1O5_09235 I 0.000
SPPG_03285 Spizellomyces punctatus SPPG_03285 I 0.000
SNOG_06135 Stagonospora nodorum SNOG_06135 I 0.000
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.000
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.000
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.000
TBP1 Arabidopsis thaliana AT3G13445 I 0.000
AUEXF2481DRAFT_7161 Aureobasidium subglaciale AUEXF2481DRAFT_7161 I 0.000
AWRI1499_4207 Brettanomyces bruxellensis AWRI1499_4207 I 0.000
Bra027434 Brassica rapa Bra027434 I 0.000
Bo6g051360 Brassica oleracea Bo6g051360 I 0.000
Bo5g132530 Brassica oleracea Bo5g132530 I 0.000
Bo3g185290 Brassica oleracea Bo3g185290 I 0.000
BN7_431 Wickerhamomyces ciferrii BN7_431 I 0.000
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.000
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.000
BGHDH14_bgh06421 Blumeria graminis BGHDH14_bgh06421 I 0.000
BDDG_03170 Blastomyces dermatitidis BDDG_03170 I 0.000
BBA_05384 Beauveria bassiana BBA_05384 I 0.000
BAUCODRAFT_76816 Baudoinia compniacensis BAUCODRAFT_76816 I 0.000
CIMG_11148 Coccidioides immitis CIMG_11148 I 0.000
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.000
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.000
MSY001_0017 Malassezia sympodialis MSY001_0017 I 0.000
MLOC_50796 Hordeum vulgare MLOC_50796 I 0.000
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.000
MGYG_01238 Microsporum gypseum MGYG_01238 I 0.000
MGU_00478 Metarhizium guizhouense MGU_00478 I 0.000
MGG_15601 Magnaporthe oryzae MGG_15601 I 0.000
MCYG_00725 Arthroderma otae MCYG_00725 I 0.000
MBR_02537 Metarhizium brunneum MBR_02537 I 0.000
MBM_05886 Marssonina brunnea MBM_05886 I 0.000
MAPG_06845 Magnaporthe poae MAPG_06845 I 0.000
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.000
MYCFIDRAFT_209898 Pseudocercospora fijiensis MYCFIDRAFT_209898 I 0.000
Mycgr3G67750 Zymoseptoria tritici Mycgr3G67750 I 0.000
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.000
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.000
OIDMADRAFT_53635 Oidiodendron maius OIDMADRAFT_53635 I 0.000
OBART10G10890 Oryza barthii OBART10G10890 I 0.000
O9G_006239 Rozella allomycis O9G_006239 I 0.000
NechaG67389 Fusarium solani NechaG67389 I 0.000
NDAI_0E03380 Naumovozyma dairenensis NDAI_0E03380 I 0.000
NCAS_0A03870 Naumovozyma castellii NCAS_0A03870 I 0.000
NAPIS_ORF01258 Nosema apis NAPIS_ORF01258 I 0.000
NAPIS_ORF00498 Nosema apis NAPIS_ORF00498 I 0.000
NAPIS_ORF00497 Nosema apis NAPIS_ORF00497 I 0.000
MANI_016516 Metarhizium anisopliae MANI_016516 I 0.000
MAM_00740 Metarhizium album MAM_00740 I 0.000
MAJ_00102 Metarhizium majus MAJ_00102 I 0.000
H102_07668 Trichophyton rubrum H102_07668 I 0.000
H101_08207 Trichophyton interdigitale H101_08207 I 0.000
GSTUM_00003160001 Tuber melanosporum GSTUM_00003160001 I 0.000
GSMUA_Achr1G26830_001 Musa acuminata GSMUA_Achr1G26830_001 I 0.000
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.000
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.000
GMDG_00522 Pseudogymnoascus destructans GMDG_00522 I 0.000
GLYMA09G41330 Glycine max GLYMA09G41330 I 0.000
GLRG_08845 Colletotrichum graminicola GLRG_08845 I 0.000
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.000
GGTG_01657 Gaeumannomyces graminis GGTG_01657 I 0.000
H105_07693 Trichophyton soudanense H105_07693 I 0.000
H311_04080 Anncaliia algerae H311_04080 I 0.000
HCBG_06828 Histoplasma capsulatum HCBG_06828 I 0.000
MAC_03480 Metarhizium acridum MAC_03480 I 0.000
M7I_0762 Glarea lozoyensis M7I_0762 I 0.000
M437DRAFT_72832 Aureobasidium melanogenum M437DRAFT_72832 I 0.000
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.000
LEMA_P121430.1 Leptosphaeria maculans LEMA_P121430.1 I 0.000
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.000
Kpol_1032p36 Vanderwaltozyma polyspora Kpol_1032p36 I 0.000
KAFR_0B02330 Kazachstania africana KAFR_0B02330 I 0.000
JL09_g2536 Pichia kudriavzevii JL09_g2536 I 0.000
HPODL_01164 Ogataea parapolymorpha HPODL_01164 I 0.000
HMPREF1541_03377 Cyphellophora europaea HMPREF1541_03377 I 0.000
G647_02374 Cladophialophora carrionii G647_02374 I 0.000