Pavir.J34225 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J34225 T196775_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34225.1.p GATA 1 16

Links

Other GATA family TFs
Other Panicum virgatum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00002p00254680 Amborella trichopoda AMTR_s00002p00254680 N 0.827
Bostr.7867s0027 Boechera stricta Bostr.7867s0027 N 0.828
BRADI2G35057 Brachypodium distachyon BRADI2G35057 N 0.450
Cagra.12434s0001 Capsella grandiflora Cagra.12434s0001 I 0.825
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.825
LPERR01G13070 Leersia perrieri LPERR01G13070 N 0.450
GSMUA_Achr2G15750_001 Musa acuminata GSMUA_Achr2G15750_001 N 0.816
OBART01G14380 Oryza barthii OBART01G14380 N 0.490
OBART05G03900 Oryza barthii OBART05G03900 N 0.450
OB05G13650 Oryza brachyantha OB05G13650 N 0.450
OB01G24090 Oryza brachyantha OB01G24090 N 0.450
ORGLA05G0036200 Oryza glaberrima ORGLA05G0036200 N 0.450
ORGLA01G0118700 Oryza glaberrima ORGLA01G0118700 N 0.450
OGLUM01G16180 Oryza glumaepatula OGLUM01G16180 N 0.450
BGIOSGA018779 Oryza indica BGIOSGA018779 N 0.450
OLONG_020882 Oryza longistaminata OLONG_020882 N 0.450
ONIVA04G04160 Oryza nivara ONIVA04G04160 N 0.450
OPUNC05G03600 Oryza punctata OPUNC05G03600 N 0.450
OPUNC01G14080 Oryza punctata OPUNC01G14080 N 0.450
ORUFI01G16060 Oryza rufipogon ORUFI01G16060 N 0.490
OS01G0343300 Oryza sativa OS01G0343300 N 0.450
OS05G0155400 Oryza sativa OS05G0155400 N 0.450
Pavir.Ea01306 Panicum virgatum Pavir.Ea01306 N 0.450
Pavir.Eb02364 Panicum virgatum Pavir.Eb02364 N 0.450
Pavir.J31164 Panicum virgatum Pavir.J31164 N 0.450
Si004417m.g Setaria italica Si004417m.g N 0.450
Si011269m.g Setaria italica Si011269m.g N 0.450
Sb03g013700 Sorghum bicolor Sb03g013700 N 0.450
Sb09g004315 Sorghum bicolor Sb09g004315 N 0.450
Traes_4AL_4108A9D5E Triticum aestivum Traes_4AL_4108A9D5E N 0.867
TRIUR3_07191 Triticum urartu TRIUR3_07191 N 0.840
GRMZM5G887975 Zea mays GRMZM5G887975 N 0.828
GRMZM2G104390 Zea mays GRMZM2G104390 N 0.450
GRMZM2G052616 Zea mays GRMZM2G052616 N 0.450
AC194965.4_FG004 Zea mays AC194965.4_FG004 N 0.450