CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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sub-1
(
Neurospora crassa
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
NCU01154
T196898_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sub-1
M01235_2.00
Neurospora crassa
NVMGATCGRNN
NNYCGATCKBN
PBM
Lambert et al.(2019)
pTH8614
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.802
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01235_2.00
GATA
52
87
CHSCNRIDTPEWRRGPDGARTLCNACGLHYAKLERK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU01154.1
GATA
417
452
CHSCNRIDTPEWRRGPDGARTLCNACGLHYAKLERK
NCU01154.2
GATA
414
449
CHSCNRIDTPEWRRGPDGARTLCNACGLHYAKLERK
Links
Other
GATA
family TFs
Other
Neurospora crassa
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy