CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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sre
(
Neurospora crassa
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
NCU07728
T196902_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sre
M01237_2.00
Neurospora crassa
NHGATHWN
NWDATCDN
PBM
Lambert et al.(2019)
pTH11832
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.802
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01237_2.00
GATA
52
85
CSNCGTTHTPLWRRSPQGAIICNACGLYLKARNA
M01237_2.00
GATA
216
250
CQNCGTTITPLWRRDEAGHTICNACGLYYKLHGVH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU07728
GATA
118
151
CSNCGTTHTPLWRRSPQGAIICNACGLYLKARNA
NCU07728
GATA
282
316
CQNCGTTITPLWRRDEAGHTICNACGLYYKLHGVH
Links
Other
GATA
family TFs
Other
Neurospora crassa
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy