1998_YCR018C (Saccharomyces mikatae)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 1998_YCR018C T197011_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRD1
M00047_2.00 		Saccharomyces cerevisiae
RGATCTMC
GKAGATCY		 PBM
Badis et al.(2008)
SRD1_2031 		0.856 0.972
SRD1
M01544_2.00 		Saccharomyces cerevisiae
NBAGWTYNN
NNRAWCTVN		 PBM
Zhu et al.(2009)
Srd1 		0.856 0.972
SRD1
M07476_2.00 		Saccharomyces cerevisiae
RGATCTVN
NBAGATCY		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0389.1 		0.856 0.972
SRD1
M08558_2.00 		Saccharomyces cerevisiae
RGATCTMN
NKAGATCY		 Misc
DeBoer et al.(2011)
YCR018C_530 		0.856 0.972
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
1998_YCR018C GATA 168 203

Links

Other GATA family TFs
Other Saccharomyces mikatae TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRD1 Saccharomyces cerevisiae YCR018C D 0.856
SU7_0367 Saccharomyces arboricola SU7_0367 I 0.856
SKUD_204801 Saccharomyces kudriavzevii SKUD_204801 I 0.856
2668_Multiple Saccharomyces bayanus 2668_Multiple I 0.855
2489_YCR018C Saccharomyces paradoxus 2489_YCR018C I 0.825
SKUD_150104 Saccharomyces kudriavzevii SKUD_150104 I 0.808