LjSGA_011217.1 (Lotus japonicus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 LjSGA_011217.1 T197109_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.841 0.889
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.821 0.889
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.821 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_011217.1 GATA 33 68

Links

Other GATA family TFs
Other Lotus japonicus TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FFUJ_12640 Fusarium fujikuroi FFUJ_12640 N 0.000
fgenesh1_pg.sca_43_chr10_1_0000008 Nectria haematococca fgenesh1_pg.sca_43_chr10_1_0000008 N 0.000
FVEG_13362 Fusarium verticillioides FVEG_13362 N 0.000
NechaG85294 Fusarium solani NechaG85294 N 0.000
VDAG_04153 Verticillium dahliae VDAG_04153 N 0.000
VDBG_04603 Verticillium albo atrum VDBG_04603 N 0.000
VDBG_04603 Verticillium alfalfae VDBG_04603 N 0.000