CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AALB009655
(
Anopheles albimanus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
AALB009655
T197249_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gata1
M08127_2.00
Mus musculus
RNAGATAAGRV
BYCTTATCTNY
ChIP-seq
Mathelier et al.(2014)
MA0035.3
0.807
0.765
Gata1
M09124_2.00
Mus musculus
BKBNNNNNNVWGATAAVVV
BBBTTATCWBNNNNNNVMV
Misc
Kulakovskiy et al.(2013)
GATA1_MOUSE.H11MO.0.A
0.807
0.765
elt-1
M08206_2.00
Caenorhabditis elegans
GATWDNVATCT
AGATBNHWATC
ChIP-seq
Contrino et al.(2012)
Mw144
0.805
0.706
elt-1
M08207_2.00
Caenorhabditis elegans
TGATAASR
YSTTATCA
ChIP-seq
Contrino et al.(2012)
Mw145
0.805
0.706
Gata6
M00165_2.00
Mus musculus
NHGATARN
NYTATCDN
PBM
Badis et al.(2009)
Gata6_3769
0.802
0.750
GATA6
M04877_2.00
Homo sapiens
HGATAABVATCD
HGATBVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_HT-SELEX
0.802
0.750
GATA6
M08124_2.00
Homo sapiens
NNNAGATAAGRNN
NNYCTTATCTNNN
ChIP-seq
Mathelier et al.(2014)
MA1104.1
0.802
0.750
GATA6
M09118_2.00
Homo sapiens
NVWGATAAGRNNN
NNNYCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_HUMAN.H11MO.0.A
0.802
0.750
Gata6
M09120_2.00
Mus musculus
NVWGATAAGV
BCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_MOUSE.H11MO.0.A
0.802
0.750
GATA6
M10592_2.00
Homo sapiens
NNHGATWDNN
NNHWATCDNN
Transfac
Matys et al.(2006)
V$GATA6_01
0.802
0.750
GATA6
M10593_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA6_Q5
0.802
0.750
GATA6
M04878_2.00
Homo sapiens
HGATAABRATCW
WGATYVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_Methyl-HT-SELEX
0.802
0.750
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AALB009655-PA
GATA
575
607
CVNCGSSDTPLWRRDVVGHTLCNACALYTRQNP
AALB009655-PA
GATA
639
673
CANCNTTTTTLWRRNNQGDPVCNACGLYFKLHNVN
Links
Other
GATA
family TFs
Other
Anopheles albimanus
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy