CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AFAF002894
(
Anopheles farauti
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
AFAF002894
T197289_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gata1
M08127_2.00
Mus musculus
RNAGATAAGRV
BYCTTATCTNY
ChIP-seq
Mathelier et al.(2014)
MA0035.3
0.812
0.794
Gata1
M09124_2.00
Mus musculus
BKBNNNNNNVWGATAAVVV
BBBTTATCWBNNNNNNVMV
Misc
Kulakovskiy et al.(2013)
GATA1_MOUSE.H11MO.0.A
0.812
0.794
grn
M03754_2.00
Drosophila melanogaster
HGATAASV
BSTTATCD
SELEX
Nitta et al.(2015)
grn_1
0.805
0.765
grn
M03755_2.00
Drosophila melanogaster
NHGATAAGNNNCTTATCDN
NHGATAAGNNNCTTATCDN
SELEX
Nitta et al.(2015)
grn_2
0.805
0.765
grn
M03756_2.00
Drosophila melanogaster
NHGATAACNNNGTTATCDN
NHGATAACNNNGTTATCDN
SELEX
Nitta et al.(2015)
grn_3
0.805
0.765
GATA1
M02738_2.00
Homo sapiens
GATWASMH
DKSTWATC
SELEX
Jolma et al.(2010)
GATA1_dimer
0.805
0.750
GATA1
M02739_2.00
Homo sapiens
HGATAA
TTATCD
SELEX
Jolma et al.(2010)
GATA1_monomer
0.805
0.750
GATA1
M04861_2.00
Homo sapiens
GATAAKDNHMTTATC
GATAAKDNHMTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_HT-SELEX
0.805
0.750
GATA1
M07963_2.00
Homo sapiens
NSWGATAASVN
NBSTTATCWSN
ChIP-seq
Gerstein et al.(2012)
K562b_GATA1_UCD
0.805
0.750
GATA1
M07964_2.00
Homo sapiens
NNKNNNNNNNSWGATAAV
BTTATCWSNNNNNNNMNN
ChIP-seq
Gerstein et al.(2012)
PBDE_GATA1_UCD
0.805
0.750
GATA1
M08202_2.00
Homo sapiens
NBKBNNNNNNSWGATAASVN
NBSTTATCWSNNNNNNVMVN
ChIP-seq
Contrino et al.(2012)
Mv73
0.805
0.750
GATA1
M08203_2.00
Homo sapiens
WGATNNNATC
GATNNNATCW
ChIP-seq
Contrino et al.(2012)
Mv75
0.805
0.750
GATA1
M09115_2.00
Homo sapiens
NBKBNNNNNNVWGATAAVV
BBTTATCWBNNNNNNVMVN
Misc
Kulakovskiy et al.(2013)
GATA1_HUMAN.H11MO.0.A
0.805
0.750
GATA1
M09549_2.00
Homo sapiens
SWGATAAGVV
BBCTTATCWS
Misc
Heinz et al.(2010)
K562-GATA1_GSE18829
0.805
0.750
GATA1
M10577_2.00
Homo sapiens
SVNGATDBBN
NVVHATCNBS
Transfac
Matys et al.(2006)
V$GATA1_01
0.805
0.750
GATA1
M10578_2.00
Homo sapiens
NHVNHGATAVKVBN
NVBMBTATCDNBDN
Transfac
Matys et al.(2006)
V$GATA1_02
0.805
0.750
GATA1
M10579_2.00
Homo sapiens
RNSNDGATTRBNRN
NYNVYAATCHNSNY
Transfac
Matys et al.(2006)
V$GATA1_03
0.805
0.750
GATA1
M10580_2.00
Homo sapiens
DNVWGATARVNVN
NBNBYTATCWBNH
Transfac
Matys et al.(2006)
V$GATA1_04
0.805
0.750
GATA1
M10581_2.00
Homo sapiens
VMHGATAAVM
KBTTATCDKB
Transfac
Matys et al.(2006)
V$GATA1_05
0.805
0.750
GATA1
M10582_2.00
Homo sapiens
MNAGATAAVR
YBTTATCTNK
Transfac
Matys et al.(2006)
V$GATA1_06
0.805
0.750
GATA1
M10583_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_10
0.805
0.750
GATA1
M10584_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_Q6
0.805
0.750
GATA1
M04862_2.00
Homo sapiens
GATAABNNNVTTATC
GATAABNNNVTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_Methyl-HT-SELEX
0.805
0.750
elt-1
M08206_2.00
Caenorhabditis elegans
GATWDNVATCT
AGATBNHWATC
ChIP-seq
Contrino et al.(2012)
Mw144
0.805
0.706
elt-1
M08207_2.00
Caenorhabditis elegans
TGATAASR
YSTTATCA
ChIP-seq
Contrino et al.(2012)
Mw145
0.805
0.706
Gata6
M00165_2.00
Mus musculus
NHGATARN
NYTATCDN
PBM
Badis et al.(2009)
Gata6_3769
0.802
0.750
GATA6
M04877_2.00
Homo sapiens
HGATAABVATCD
HGATBVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_HT-SELEX
0.802
0.750
GATA6
M08124_2.00
Homo sapiens
NNNAGATAAGRNN
NNYCTTATCTNNN
ChIP-seq
Mathelier et al.(2014)
MA1104.1
0.802
0.750
GATA6
M09118_2.00
Homo sapiens
NVWGATAAGRNNN
NNNYCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_HUMAN.H11MO.0.A
0.802
0.750
Gata6
M09120_2.00
Mus musculus
NVWGATAAGV
BCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_MOUSE.H11MO.0.A
0.802
0.750
GATA6
M10592_2.00
Homo sapiens
NNHGATWDNN
NNHWATCDNN
Transfac
Matys et al.(2006)
V$GATA6_01
0.802
0.750
GATA6
M10593_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA6_Q5
0.802
0.750
GATA6
M04878_2.00
Homo sapiens
HGATAABRATCW
WGATYVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_Methyl-HT-SELEX
0.802
0.750
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AFAF002894-PA
GATA
578
610
CVNCGSSDTPLWRRDVVGHTLCNACALYTRQNP
AFAF002894-PA
GATA
672
706
CANCQTTTTTLWRRNNSGDPVCNACGLYFKLHSVN
Links
Other
GATA
family TFs
Other
Anopheles farauti
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy