CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CapteG133139
(
Capitella teleta
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03615 (GCM)
IPR003902
CapteG133139
T197951_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.699
0.699
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.699
0.699
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.699
0.699
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.699
0.699
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.654
0.654
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.654
0.654
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.654
0.654
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY
RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.640
0.640
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.640
0.640
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.632
0.632
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD
HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.625
0.625
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN
NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.625
0.625
GCM2
M10602_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.625
0.625
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN
NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.625
0.625
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN
NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.618
0.618
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY
RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.618
0.618
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR
YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.618
0.618
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.618
0.618
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS
SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.618
0.618
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV
BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.618
0.618
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV
BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.618
0.618
GCM1
M10603_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.618
0.618
GCM1
M10604_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.618
0.618
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV
BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.618
0.618
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CapteP133139
GCM
1
136
MDWPDGHCKYVYHDDSEEARRHNSGWAMRNTNNHNVNILKKSCLGVLVCSLRCRMEESATVHLRPAICDKARKKQLGKSCPNPRCDGILELQPCRGHCGYPVTHFWRHVDGYVFFQAKGVHDHPRPEMKASAEARR
Links
Other
GCM
family TFs
Other
Capitella teleta
TFs
195 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ISCW022914
Ixodes scapularis
ISCW022914
I
0.779
LDEC012509
Leptinotarsa decemlineata
LDEC012509
I
0.736
L798_07938
Zootermopsis nevadensis
L798_07938
I
0.735
YQE_03062
Dendroctonus ponderosae
YQE_03062
I
0.735
DAPPUDRAFT_26189
Daphnia pulex
DAPPUDRAFT_26189
I
0.735
BGIBMGA006182
Bombyx mori
BGIBMGA006182
I
0.728
AFAF005680
Anopheles farauti
AFAF005680
I
0.728
MCINX011946
Melitaea cinxia
MCINX011946
I
0.728
ADIR000711
Anopheles dirus
ADIR000711
I
0.728
HMEL005671
Heliconius melpomene
HMEL005671
I
0.728
AARA011980
Anopheles arabiensis
AARA011980
I
0.721
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.721
TC014730
Tribolium castaneum
TC014730
I
0.721
AMAM003661
Anopheles maculatus
AMAM003661
I
0.721
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.721
AMIN006368
Anopheles minimus
AMIN006368
I
0.721
ACYPI34548
Acyrthosiphon pisum
ACYPI34548
I
0.721
AGAP007783
Anopheles gambiae
AGAP007783
I
0.721
SINV21711
Solenopsis invicta
SINV21711
I
0.713
AAEL000623
Aedes aegypti
AAEL000623
I
0.713
Cflo_04549--XP_393815.2_APIME
Camponotus floridanus
Cflo_04549--XP_393815.2_APIME
I
0.713
AFUN009837
Anopheles funestus
AFUN009837
I
0.713
tetur09g06060
Tetranychus urticae
tetur09g06060
I
0.707
KGM_05743
Danaus plexippus
KGM_05743
I
0.707
RPRC001299
Rhodnius prolixus
RPRC001299
I
0.707
Ocbimv22027544m.g
Octopus bimaculoides
Ocbimv22027544m.g
I
0.707
NV17454
Nasonia vitripennis
NV17454
I
0.706
AALB008013
Anopheles albimanus
AALB008013
I
0.706
PHUM436840
Pediculus humanus
PHUM436840
I
0.706
AEPI007160
Anopheles epiroticus
AEPI007160
I
0.700
CLEC013329
Cimex lectularius
CLEC013329
I
0.700
ASIS002985
Anopheles sinensis
ASIS002985
I
0.700
ACUA009622
Anopheles culicifacies
ACUA009622
I
0.700
gcm
Drosophila melanogaster
FBgn0014179
D
0.699
CGI_10019940
Crassostrea gigas
CGI_10019940
I
0.699
GM12386
Drosophila sechellia
FBgn0167323
I
0.699
GB45031
Apis mellifera
GB45031
I
0.693
AATE008476
Anopheles atroparvus
AATE008476
I
0.693
ACHR001414
Anopheles christyi
ACHR001414
I
0.693
ACEP23384
Atta cephalotes
ACEP23384
I
0.693
BGLB002570
Biomphalaria glabrata
BGLB002570
I
0.686
ADAC002327
Anopheles darlingi
ADAC002327
I
0.686
PPAI003635
Phlebotomus papatasi
PPAI003635
I
0.686
AMEC020313
Anopheles melas
AMEC020313
I
0.686
GF21907
Drosophila ananassae
FBgn0098907
I
0.686
Hsal_09608--XP_393815.2_APIME
Harpegnathos saltator
Hsal_09608--XP_393815.2_APIME
I
0.686
GI17574
Drosophila mojavensis
FBgn0140318
I
0.684
GCM1
Oryctolagus cuniculus
ENSOCUG00000009246
I
0.682
GE10457
Drosophila yakuba
FBgn0228318
I
0.679
CpipJ_CPIJ006640
Culex pipiens
CpipJ_CPIJ006640
I
0.679
MDOA004732
Musca domestica
MDOA004732
I
0.679
CPIJ006640
Culex quinquefasciatus
CPIJ006640
I
0.679
GA11505
Drosophila pseudoobscura
FBgn0071556
I
0.679
GG24019
Drosophila erecta
FBgn0116158
I
0.679
GL19218
Drosophila persimilis
FBgn0156817
I
0.679
ACOM031025
Anopheles coluzzii
ACOM031025
I
0.678
AMEM005966
Anopheles merus
AMEM005966
I
0.678
GJ17916
Drosophila virilis
FBgn0205084
I
0.676
GK23810
Drosophila willistoni
FBgn0225772
I
0.676
fgenesh2_pg.scaffold_122000051
Branchiostoma floridae
fgenesh2_pg.scaffold_122000051
I
0.671
GH11056
Drosophila grimshawi
FBgn0118537
I
0.671
LotgiG112320
Lottia gigantea
LotgiG112320
I
0.664
LCUP008083
Lucilia cuprina
LCUP008083
I
0.662
GJ18313
Drosophila virilis
FBgn0205472
I
0.662
MDOA003644
Musca domestica
MDOA003644
I
0.662
AMAM005757
Anopheles maculatus
AMAM005757
I
0.661
GA17734
Drosophila pseudoobscura
FBgn0077744
I
0.654
GF22779
Drosophila ananassae
FBgn0099773
I
0.654
GG10041
Drosophila erecta
FBgn0102353
I
0.654
GK23867
Drosophila willistoni
FBgn0225829
I
0.654
AALB008012
Anopheles albimanus
AALB008012
I
0.654
GL18919
Drosophila persimilis
FBgn0156520
I
0.654
gcm2
Drosophila melanogaster
FBgn0019809
D
0.654
CPIJ006639
Culex quinquefasciatus
CPIJ006639
I
0.650
AAEL000631
Aedes aegypti
AAEL000631
I
0.650
CpipJ_CPIJ006639
Culex pipiens
CpipJ_CPIJ006639
I
0.650
GD22349
Drosophila simulans
FBgn0193756
I
0.650
HelroG145480
Helobdella robusta
HelroG145480
I
0.647
GI11073
Drosophila mojavensis
FBgn0133835
I
0.643
AATE020589
Anopheles atroparvus
AATE020589
I
0.643
ASIS021139
Anopheles sinensis
ASIS021139
I
0.643
AQUA003641
Anopheles quadriannulatus
AQUA003641
I
0.640
AMEM008520
Anopheles merus
AMEM008520
I
0.640
AFAF000663
Anopheles farauti
AFAF000663
I
0.640
AGAP007782
Anopheles gambiae
AGAP007782
I
0.640
AEPI007161
Anopheles epiroticus
AEPI007161
I
0.640
AARA011979
Anopheles arabiensis
AARA011979
I
0.640
ACOM031032
Anopheles coluzzii
ACOM031032
I
0.640
ENSXMAG00000002726
Xiphophorus maculatus
ENSXMAG00000002726
I
0.640
GE18856
Drosophila yakuba
FBgn0236239
I
0.636
GM17569
Drosophila sechellia
FBgn0172477
I
0.636
GH10675
Drosophila grimshawi
FBgn0118156
I
0.636
gw.285.88.1
Branchiostoma floridae
gw.285.88.1
I
0.633
GCM2
Procavia capensis
ENSPCAG00000011887
I
0.632
Aan_R001550
Calypte anna
Aan_R001550
I
0.632
ENSFALG00000013344
Ficedula albicollis
ENSFALG00000013344
I
0.632
ENSAMEG00000005755
Ailuropoda melanoleuca
ENSAMEG00000005755
I
0.632
ENSMICG00000004238
Microcebus murinus
ENSMICG00000004238
I
0.632
Brh_R007088
Buceros rhinoceros
Brh_R007088
I
0.632
Afo_R013226
Aptenodytes forsteri
Afo_R013226
I
0.632
ASTEI01673
Anopheles stephensi
ASTEI01673
I
0.632
Gfo_R006501
Geospiza fortis
Gfo_R006501
I
0.632
ENSSHAG00000015905
Sarcophilus harrisii
ENSSHAG00000015905
I
0.632
GCM2
Taeniopygia guttata
ENSTGUG00000005756
D
0.632
Gcm1
Mus musculus
ENSMUSG00000023333
D
0.630
Gcm1
Rattus norvegicus
ENSRNOG00000007932
D
0.630
ENSPFOG00000008781
Poecilia formosa
ENSPFOG00000008781
I
0.630
GCM1
Erinaceus europaeus
ENSEEUG00000013606
I
0.627
GCM2
Gallus gallus
ENSGALG00000012768
I
0.625
GCM2
Monodelphis domestica
ENSMODG00000010371
I
0.625
GCM2
Felis catus
ENSFCAG00000001608
I
0.625
GCM2
Equus caballus
ENSECAG00000017632
I
0.625
Myotis_brandtii_Gcm1_10005135
Myotis brandtii
Myotis_brandtii_Gcm1_10005135
I
0.625
GCM1
Myotis lucifugus
ENSMLUG00000002762
I
0.625
GCM1
Monodelphis domestica
ENSMODG00000018803
I
0.625
GCM2
Oryctolagus cuniculus
ENSOCUG00000017698
I
0.625
ENSMPUG00000000633
Mustela putorius furo
ENSMPUG00000000633
I
0.625
GCM2
Canis familiaris
ENSCAFG00000009747
I
0.625
GCM1
Tursiops truncatus
ENSTTRG00000015250
I
0.625
GCM2
Tupaia belangeri
ENSTBEG00000006181
I
0.625
ENSPMAG00000009211
Petromyzon marinus
ENSPMAG00000009211
I
0.625
GCM1
Pteropus vampyrus
ENSPVAG00000013341
I
0.625
GCM2
Choloepus hoffmanni
ENSCHOG00000011562
I
0.625
GCM2
Bos taurus
ENSBTAG00000018787
I
0.625
ENSNLEG00000000645
Nomascus leucogenys
ENSNLEG00000000645
I
0.625
ENSONIG00000009885
Oreochromis niloticus
ENSONIG00000009885
I
0.625
gcm2
Danio rerio
ENSDARG00000045413
I
0.625
GCM1
Otolemur garnettii
ENSOGAG00000007879
I
0.625
GCM2
Callithrix jacchus
ENSCJAG00000019182
I
0.625
GCM1
Loxodonta africana
ENSLAFG00000012093
I
0.623
ENSAPLG00000002817
Anas platyrhynchos
ENSAPLG00000002817
I
0.623
GCM1
Dasypus novemcinctus
ENSDNOG00000016682
I
0.618
GCM2
Anolis carolinensis
ENSACAG00000008677
I
0.618
ENSAMXG00000006073
Astyanax mexicanus
ENSAMXG00000006073
I
0.618
ENSAMEG00000002669
Ailuropoda melanoleuca
ENSAMEG00000002669
I
0.618
XP_004449939.1
Dasypus novemcinctus
XP_004449939.1
D
0.618
GCM2
Ochotona princeps
ENSOPRG00000012641
I
0.618
GCM2
Meleagris gallopavo
ENSMGAG00000003533
I
0.618
GCM2
Loxodonta africana
ENSLAFG00000007475
I
0.618
ENSTSYG00000006813
Tarsius syrichta
ENSTSYG00000006813
I
0.618
ENSSSCG00000002630
Sus scrofa
ENSSSCG00000002630
I
0.618
ENSOARG00000015521
Ovis aries
ENSOARG00000015521
I
0.618
GCM2
Tursiops truncatus
ENSTTRG00000003674
I
0.618
ENSMPUG00000008870
Mustela putorius furo
ENSMPUG00000008870
I
0.616
GCM2
Macaca mulatta
ENSMMUG00000007719
I
0.616
GCM2
Myotis lucifugus
ENSMLUG00000004637
I
0.616
GCM2
Dasypus novemcinctus
ENSDNOG00000003701
I
0.616
ENSOARG00000015312
Ovis aries
ENSOARG00000015312
I
0.616
GCM1
Canis familiaris
ENSCAFG00000002273
I
0.616
GCM2
Vicugna pacos
ENSVPAG00000003006
I
0.616
ENSCSAG00000007467
Chlorocebus sabaeus
ENSCSAG00000007467
I
0.616
GCM1
Bos taurus
ENSBTAG00000008148
I
0.616
ENSPANG00000026314
Papio anubis
ENSPANG00000026314
I
0.616
GCM2
Pan troglodytes
ENSPTRG00000017724
I
0.616
GCM2
Homo sapiens
ENSG00000124827
D
0.616
ENSP00000368805-D1
Bos grunniens
ENSP00000368805-D1
I
0.616
ENSP00000368805
Macaca fascicularis
ENSP00000368805
I
0.616
ENSMEUG00000004103
Macropus eugenii
ENSMEUG00000004103
I
0.616
Pvit_03812
Pogona vitticeps
Pvit_03812
I
0.616
ENSPPYG00000016228
Pongo abelii
ENSPPYG00000016228
I
0.616
GCM2
Gorilla gorilla
ENSGGOG00000023360
I
0.616
ENSBTAP00000010709-D1
Bos grunniens
ENSBTAP00000010709-D1
I
0.616
GCM1
Felis catus
ENSFCAG00000009490
I
0.616
AMIN006367
Anopheles minimus
AMIN006367
I
0.614
ADIR000710
Anopheles dirus
ADIR000710
I
0.614
AFUN009836
Anopheles funestus
AFUN009836
I
0.614
ACUA018162
Anopheles culicifacies
ACUA018162
I
0.614
ACHR004082
Anopheles christyi
ACHR004082
I
0.614
EmuJ_001115800
Echinococcus multilocularis
EmuJ_001115800
N
0.610
Pvit_11235
Pogona vitticeps
Pvit_11235
I
0.610
Cmyd_10006831
Chelonia mydas
Cmyd_10006831
I
0.610
gcm2
Xenopus tropicalis
XB-GENE-492156
I
0.610
GCM1
Vicugna pacos
ENSVPAG00000006379
I
0.610
GCM2
Ornithorhynchus anatinus
ENSOANG00000007191
I
0.610
Gcm2
Rattus norvegicus
ENSRNOG00000015008
I
0.610
Sakowv30018670m.g
Saccoglossus kowalevskii
Sakowv30018670m.g
I
0.610
ENSGMOG00000012709
Gadus morhua
ENSGMOG00000012709
I
0.610
ENSPSIG00000013518
Pelodiscus sinensis
ENSPSIG00000013518
I
0.609
ENSTSYG00000000507
Tarsius syrichta
ENSTSYG00000000507
I
0.609
ENSSHAG00000010590
Sarcophilus harrisii
ENSSHAG00000010590
I
0.609
GCM1
Pan troglodytes
ENSPTRG00000018288
I
0.609
ENSPPYG00000016719
Pongo abelii
ENSPPYG00000016719
I
0.609
ENSPSIG00000004698
Pelodiscus sinensis
ENSPSIG00000004698
I
0.609
ENSCSAG00000013148
Chlorocebus sabaeus
ENSCSAG00000013148
I
0.609
ENSLOCG00000013145
Lepisosteus oculatus
ENSLOCG00000013145
I
0.609
GCM1
Homo sapiens
ENSG00000137270
D
0.609
ENSP00000259803
Macaca fascicularis
ENSP00000259803
I
0.609
gcm2
Gasterosteus aculeatus
ENSGACG00000001157
I
0.609
GCM1
Equus caballus
ENSECAG00000014228
I
0.609
GCM1
Macaca mulatta
ENSMMUG00000022083
I
0.609
gcm2
Oryzias latipes
ENSORLG00000019715
I
0.609
GCM2
Cavia porcellus
ENSCPOG00000011254
I
0.609
GCM1
Gorilla gorilla
ENSGGOG00000006527
I
0.609
ENSNLEG00000003544
Nomascus leucogenys
ENSNLEG00000003544
I
0.609
GCM1
Callithrix jacchus
ENSCJAG00000011189
I
0.609