CGI_10019940 (Crassostrea gigas)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 CGI_10019940 T197957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.700 0.700
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.700 0.700
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.700 0.700
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.693 0.693
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.693 0.693
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.693 0.693
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.693 0.693
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.693 0.693
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.693 0.693
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.693 0.693
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.693 0.693
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.671 0.671
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.664 0.664
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.657 0.657
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.636 0.636
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.636 0.636
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.636 0.636
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.636 0.636
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.621 0.621
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.621 0.621
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.621 0.621
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.621 0.621
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.621 0.621
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.621 0.621
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.621 0.621
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.621 0.621
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.621 0.621
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC24558 GCM 41 180

Links

Other GCM family TFs
Other Crassostrea gigas TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.667
gcm Drosophila melanogaster FBgn0014179 D 0.693
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.636
Gcm1 Mus musculus ENSMUSG00000023333 D 0.645
GCM2 Homo sapiens ENSG00000124827 D 0.703
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.645
GCM1 Homo sapiens ENSG00000137270 D 0.630
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.671
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.636
gcm2 Drosophila melanogaster FBgn0019809 D 0.700
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.664
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.743
TC014730 Tribolium castaneum TC014730 I 0.736
SMAR010130 Strigamia maritima SMAR010130 I 0.729
SINV21711 Solenopsis invicta SINV21711 I 0.700
RPRC001299 Rhodnius prolixus RPRC001299 I 0.700
PHUM436840 Pediculus humanus PHUM436840 I 0.714
NV17454 Nasonia vitripennis NV17454 I 0.686
MCINX011946 Melitaea cinxia MCINX011946 I 0.707
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.630
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.679
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.743
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.700
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.629
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.681
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.671
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.643
Aan_R001550 Calypte anna Aan_R001550 I 0.688
Aan_R001196 Calypte anna Aan_R001196 I 0.636
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.664
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.638
LotgiG112320 Lottia gigantea LotgiG112320 I 0.750
L798_07938 Zootermopsis nevadensis L798_07938 I 0.721
GL18919 Drosophila persimilis FBgn0156520 I 0.686
GI17574 Drosophila mojavensis FBgn0140318 I 0.686
GI11073 Drosophila mojavensis FBgn0133835 I 0.707
GH11056 Drosophila grimshawi FBgn0118537 I 0.686
GH10675 Drosophila grimshawi FBgn0118156 I 0.714
GG24019 Drosophila erecta FBgn0116158 I 0.686
GG10041 Drosophila erecta FBgn0102353 I 0.700
HMEL005671 Heliconius melpomene HMEL005671 I 0.707
GF22779 Drosophila ananassae FBgn0099773 I 0.700
GF21907 Drosophila ananassae FBgn0098907 I 0.693
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.686
GL19218 Drosophila persimilis FBgn0156817 I 0.679
GM12386 Drosophila sechellia FBgn0167323 I 0.693
KGM_05743 Danaus plexippus KGM_05743 I 0.707
ISCW022914 Ixodes scapularis ISCW022914 I 0.707
GB45031 Apis mellifera GB45031 I 0.707
GE18856 Drosophila yakuba FBgn0236239 I 0.693
GE10457 Drosophila yakuba FBgn0228318 I 0.679
GK23867 Drosophila willistoni FBgn0225829 I 0.679
GK23810 Drosophila willistoni FBgn0225772 I 0.686
GJ18313 Drosophila virilis FBgn0205472 I 0.707
GJ17916 Drosophila virilis FBgn0205084 I 0.679
GD22349 Drosophila simulans FBgn0193756 I 0.664
GM17569 Drosophila sechellia FBgn0172477 I 0.700
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.679
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.703
A_07498 Schistosoma haematobium A_07498 I 0.612
AMEC020313 Anopheles melas AMEC020313 I 0.700
AMAM005757 Anopheles maculatus AMAM005757 I 0.670
AMAM003661 Anopheles maculatus AMAM003661 I 0.714
AFUN009837 Anopheles funestus AFUN009837 I 0.714
AFUN009836 Anopheles funestus AFUN009836 I 0.636
AFAF005680 Anopheles farauti AFAF005680 I 0.714
AFAF000663 Anopheles farauti AFAF000663 I 0.643
AEPI007161 Anopheles epiroticus AEPI007161 I 0.643
AEPI007160 Anopheles epiroticus AEPI007160 I 0.714
ADIR000711 Anopheles dirus ADIR000711 I 0.707
ADIR000710 Anopheles dirus ADIR000710 I 0.643
ACUA018162 Anopheles culicifacies ACUA018162 I 0.636
AMEM005966 Anopheles merus AMEM005966 I 0.690
AMEM008520 Anopheles merus AMEM008520 I 0.643
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.700
MDOA004732 Musca domestica MDOA004732 I 0.693
MDOA003644 Musca domestica MDOA003644 I 0.714
BGLB002570 Biomphalaria glabrata BGLB002570 I 0.700
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.636
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.714
ASIS021139 Anopheles sinensis ASIS021139 I 0.664
ASIS002985 Anopheles sinensis ASIS002985 I 0.700
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.714
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.643
AMIN006368 Anopheles minimus AMIN006368 I 0.714
AMIN006367 Anopheles minimus AMIN006367 I 0.636
ACUA009622 Anopheles culicifacies ACUA009622 I 0.714
ACOM031032 Anopheles coluzzii ACOM031032 I 0.643
CLEC013329 Cimex lectularius CLEC013329 I 0.707
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.657
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.786
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.708
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.729
Tal_R009935 Tyto alba Tal_R009935 I 0.645
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.688
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.652
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.638
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.700
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.629
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.671
LCUP008083 Lucilia cuprina LCUP008083 I 0.693
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.721
ACOM031025 Anopheles coluzzii ACOM031025 I 0.690
ACHR004082 Anopheles christyi ACHR004082 I 0.636
ACHR001414 Anopheles christyi ACHR001414 I 0.721
AATE020589 Anopheles atroparvus AATE020589 I 0.671
AATE008476 Anopheles atroparvus AATE008476 I 0.693
AARA011980 Anopheles arabiensis AARA011980 I 0.707
AARA011979 Anopheles arabiensis AARA011979 I 0.643
AALB008013 Anopheles albimanus AALB008013 I 0.714
AALB008012 Anopheles albimanus AALB008012 I 0.671
gcm2.S Xenopus laevis XB-GENE-866131 I 0.674
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.645
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.664
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.696
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.664
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.671
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.657
GCM2 Equus caballus ENSECAG00000017632 I 0.679
GCM1 Equus caballus ENSECAG00000014228 I 0.630
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.614
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.636
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.681
gcm2 Danio rerio ENSDARG00000045413 I 0.679
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.630
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.696
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.688
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.629
GCM2 Echinops telfairi ENSETEG00000012473 I 0.661
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.645
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.667
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.652
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.657
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.703
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.630
GCM1 Gallus gallus ENSGALG00000016316 I 0.645
GCM2 Gallus gallus ENSGALG00000012768 I 0.664
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.674
GCM1 Felis catus ENSFCAG00000009490 I 0.638
GCM2 Felis catus ENSFCAG00000001608 I 0.679
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.671
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.679
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.630
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.671
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.671
CapteG133139 Capitella teleta CapteG133139 I 0.699
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.707
AGAP007783 Anopheles gambiae AGAP007783 I 0.714
AGAP007782 Anopheles gambiae AGAP007782 I 0.643
ADAC002327 Anopheles darlingi ADAC002327 I 0.707
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.714
ACEP23384 Atta cephalotes ACEP23384 I 0.707
AAEL000631 Aedes aegypti AAEL000631 I 0.657
AAEL000623 Aedes aegypti AAEL000623 I 0.721
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.714
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.714
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.693
GCM2 Canis familiaris ENSCAFG00000009747 I 0.696
GCM1 Canis familiaris ENSCAFG00000002273 I 0.638
GCM2 Bos taurus ENSBTAG00000018787 I 0.693
GCM1 Bos taurus ENSBTAG00000008148 I 0.638
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.645
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.681
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.664
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.636
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.671
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.679
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.661
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.671
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.645
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.632
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.636
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.650
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.630
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.703
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.652
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.681
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.630
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.703
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.671
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.681
GCM2 Procavia capensis ENSPCAG00000011887 I 0.664
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.681
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.667
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.681
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.636
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.679
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.686
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.638
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.629
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.688
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.614
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.667
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.645
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.636
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.703
gcm2 Oryzias latipes ENSORLG00000019715 I 0.667
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.674
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.657
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.630
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.696
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.688
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.638
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.696
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.623
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.667
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.645
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.616
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.674
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.645
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.688
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.638
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.681
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.679
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.621
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.679
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.654
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.686
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.638
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.664
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.630
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.686
Gcm2 Mus musculus ENSMUSG00000021362 I 0.681
SPER_0000189601 Spirometra erinaceieuropaei SPER_0000189601 N 0.625
SPER_0000337001 Spirometra erinaceieuropaei SPER_0000337001 N 0.625
SPER_0002092701 Spirometra erinaceieuropaei SPER_0002092701 N 0.625
SSLN_0000174801 Schistocephalus solidus SSLN_0000174801 N 0.625