CGI_10019940 (Crassostrea gigas)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 CGI_10019940 T197957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.700 0.700
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.700 0.700
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.700 0.700
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.693 0.693
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.693 0.693
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.693 0.693
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.693 0.693
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.693 0.693
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.693 0.693
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.693 0.693
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.693 0.693
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.671 0.671
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.664 0.664
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.657 0.657
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.636 0.636
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.636 0.636
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.636 0.636
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.636 0.636
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.621 0.621
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.621 0.621
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.621 0.621
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.621 0.621
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.621 0.621
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.621 0.621
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.621 0.621
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.621 0.621
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.621 0.621
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC24558 GCM 41 180

Links

Other GCM family TFs
Other Crassostrea gigas TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000771 Aedes aegypti AAEL000771 N 0.000
ENSAPLG00000008530 Anas platyrhynchos ENSAPLG00000008530 N 0.000
ENSAPLG00000013168 Anas platyrhynchos ENSAPLG00000013168 I 0.000
ENSAPLG00000010204 Anas platyrhynchos ENSAPLG00000010204 N 0.000
ENSAPLG00000003216 Anas platyrhynchos ENSAPLG00000003216 N 0.000
ANCCEY_05358 Ancylostoma ceylanicum ANCCEY_05358 N 0.000
ANCDUO_13942 Ancylostoma duodenale ANCDUO_13942 N 0.000
AALB009772 Anopheles albimanus AALB009772 N 0.000
AALB009867 Anopheles albimanus AALB009867 N 0.000
AATE015714 Anopheles atroparvus AATE015714 N 0.000
AATE016483 Anopheles atroparvus AATE016483 N 0.000
ACOM026653 Anopheles coluzzii ACOM026653 N 0.000
ACOM022799 Anopheles coluzzii ACOM022799 N 0.000
ACUA008827 Anopheles culicifacies ACUA008827 N 0.000
ACUA012732 Anopheles culicifacies ACUA012732 N 0.000
ACUA010594 Anopheles culicifacies ACUA010594 N 0.000
ADIR009661 Anopheles dirus ADIR009661 N 0.000
ADIR005631 Anopheles dirus ADIR005631 N 0.000
AEPI003629 Anopheles epiroticus AEPI003629 N 0.000
AEPI007652 Anopheles epiroticus AEPI007652 N 0.000
AEPI007948 Anopheles epiroticus AEPI007948 N 0.000
AFUN009317 Anopheles funestus AFUN009317 N 0.000
AFUN010198 Anopheles funestus AFUN010198 N 0.000
AFUN006689 Anopheles funestus AFUN006689 N 0.000
AGAP028091 Anopheles gambiae AGAP028091 N 0.000
AMAM004028 Anopheles maculatus AMAM004028 N 0.000
AMAM023617 Anopheles maculatus AMAM023617 N 0.000
AMEC007393 Anopheles melas AMEC007393 N 0.000
AMEC011653 Anopheles melas AMEC011653 N 0.000
AMEM002834 Anopheles merus AMEM002834 N 0.000
AMEM007694 Anopheles merus AMEM007694 N 0.000
AMIN001220 Anopheles minimus AMIN001220 N 0.000
AMIN009302 Anopheles minimus AMIN009302 N 0.000
AQUA001261 Anopheles quadriannulatus AQUA001261 N 0.000
AQUA005880 Anopheles quadriannulatus AQUA005880 N 0.000
ASIS001889 Anopheles sinensis ASIS001889 N 0.000
ASTEI06131 Anopheles stephensi ASTEI06131 N 0.000
ASTEI06408 Anopheles stephensi ASTEI06408 N 0.000
Afo_R012388 Aptenodytes forsteri Afo_R012388 N 0.000
Afo_R012670 Aptenodytes forsteri Afo_R012670 N 0.000
Afo_R011382 Aptenodytes forsteri Afo_R011382 N 0.000
ALUE_0000245701 Ascaris lumbricoides ALUE_0000245701 N 0.000
ALUE_0000639901 Ascaris lumbricoides ALUE_0000639901 N 0.000
ENSAMXG00000017231 Astyanax mexicanus ENSAMXG00000017231 I 0.000
ACEP10857 Atta cephalotes ACEP10857 N 0.000
ACEP25851 Atta cephalotes ACEP25851 N 0.000
68433 Aureococcus anophagefferens 68433 N 0.000
67303 Aureococcus anophagefferens 67303 N 0.000
BGLB010902 Biomphalaria glabrata BGLB010902 N 0.000
BGIBMGA003081 Bombyx mori BGIBMGA003081 N 0.000
ENSBTAP00000027633-D1 Bos grunniens ENSBTAP00000027633-D1 I 0.000
yakG000714 Bos grunniens yakG000714 N 0.000
BOTBODRAFT_575781 Botryobasidium botryosum BOTBODRAFT_575781 N 0.000
e_gw.60.194.1 Branchiostoma floridae e_gw.60.194.1 N 0.000
Brh_R004116 Buceros rhinoceros Brh_R004116 N 0.000
Brh_R007868 Buceros rhinoceros Brh_R007868 N 0.000
CBN25334 Caenorhabditis brenneri CBN25334 N 0.000
CBN19486 Caenorhabditis brenneri CBN19486 N 0.000
sox-2 Caenorhabditis elegans WBGene00004949 I 0.000
SOX8 Callithrix jacchus ENSCJAG00000002684 I 0.000
Aan_R006397 Calypte anna Aan_R006397 N 0.000
CaO19.400 Candida albicans CaO19.400 N 0.000
CaO19.8030 Candida albicans CaO19.8030 N 0.000
PK00252.1 Cannabis sativa PK00252.1 N 0.000
Cmyd_10006594 Chelonia mydas Cmyd_10006594 N 0.000
ENSCSAG00000016751 Chlorocebus sabaeus ENSCSAG00000016751 N 0.000
CLEC006960 Cimex lectularius CLEC006960 N 0.000
CpipJ_CPIJ012498 Culex pipiens CpipJ_CPIJ012498 N 0.000
CpipJ_CPIJ014017 Culex pipiens CpipJ_CPIJ014017 N 0.000
CpipJ_CPIJ012041 Culex pipiens CpipJ_CPIJ012041 N 0.000
CPIJ012498 Culex quinquefasciatus CPIJ012498 N 0.000
CPIJ014017 Culex quinquefasciatus CPIJ014017 N 0.000
CPIJ012041 Culex quinquefasciatus CPIJ012041 N 0.000
DAPPUDRAFT_259784 Daphnia pulex DAPPUDRAFT_259784 N 0.000
DAPPUDRAFT_113704 Daphnia pulex DAPPUDRAFT_113704 N 0.000
SOX18 Dasypus novemcinctus ENSDNOG00000036237 N 0.000
YQE_13041 Dendroctonus ponderosae YQE_13041 N 0.000
YQE_08562 Dendroctonus ponderosae YQE_08562 N 0.000
YQE_03817 Dendroctonus ponderosae YQE_03817 N 0.000
DDB_G0287073 Dictyostelium discoideum DDB_G0287073 N 0.000
estExt_fgeneshDP_kg.C_1020010 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1020010 N 0.000
DILT_0001419401 Diphyllobothrium latum DILT_0001419401 N 0.000
SOX10 Echinops telfairi ENSETEG00000012633 I 0.000
SOX9 Echinops telfairi ENSETEG00000020237 I 0.000
SOX8 Echinops telfairi ENSETEG00000015470 N 0.000
ECPE_0001383301 Echinostoma caproni ECPE_0001383301 N 0.000
EDI_065970 Entamoeba dispar EDI_065970 N 0.000
UCREL1_237 Eutypa lata UCREL1_237 N 0.000
SOX8 Felis catus ENSFCAG00000004219 N 0.000
ENSFCAG00000015685 Felis catus ENSFCAG00000015685 I 0.000
SOX2 Felis catus ENSFCAG00000029205 I 0.000
ENSFALG00000011068 Ficedula albicollis ENSFALG00000011068 N 0.000
ENSGALG00000023601 Gallus gallus ENSGALG00000023601 N 0.000
Gfo_R008143 Geospiza fortis Gfo_R008143 N 0.000
M7I_1506 Glarea lozoyensis M7I_1506 N 0.000
GPLIN_001054700 Globodera pallida GPLIN_001054700 N 0.000
GLOTRDRAFT_8101 Gloeophyllum trabeum GLOTRDRAFT_8101 N 0.000
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.000
GPUH_0000499601 Gongylonema pulchrum GPUH_0000499601 N 0.000
Gorai.005G106800 Gossypium raimondii Gorai.005G106800 N 0.000
HHAL001583-PA Halyomorpha halys HHAL001583-PA N 0.000
HHAL001293-PA Halyomorpha halys HHAL001293-PA N 0.000
HHAL000218-PA Halyomorpha halys HHAL000218-PA N 0.000
Hsal_05005--XP_001122373.1_APIME Harpegnathos saltator Hsal_05005--XP_001122373.1_APIME N 0.000
HMEL013676 Heliconius melpomene HMEL013676 N 0.000
HelroG68905 Helobdella robusta HelroG68905 N 0.000
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N 0.000
HmN_000301900 Hymenolepis microstoma HmN_000301900 N 0.000
ISCW001638 Ixodes scapularis ISCW001638 N 0.000
K443DRAFT_58201 Laccaria amethystina K443DRAFT_58201 N 0.000
LACBIDRAFT_169971 Laccaria bicolor LACBIDRAFT_169971 N 0.000
LbrM.21.1660 Leishmania braziliensis LbrM.21.1660 N 0.000
LDEC018263 Leptinotarsa decemlineata LDEC018263 N 0.000
LDEC017494 Leptinotarsa decemlineata LDEC017494 N 0.000
LotgiG143673 Lottia gigantea LotgiG143673 N 0.000
ENSP00000409273 Macaca fascicularis ENSP00000409273 I 0.000
MESCA006364 Megaselia scalaris MESCA006364 N 0.000
MESCA012239 Megaselia scalaris MESCA012239 I 0.000
MELLADRAFT_86211 Melampsora laricipopulina MELLADRAFT_86211 N 0.000
ENSMGAG00000006336 Meleagris gallopavo ENSMGAG00000006336 N 0.000
ENSMGAG00000006624 Meleagris gallopavo ENSMGAG00000006624 N 0.000
Minc18937 Meloidogyne incognita Minc18937 N 0.000
SOX8 Microcebus murinus ENSMICG00000011516 I 0.000
MPER_06248 Moniliophthora perniciosa MPER_06248 N 0.000
Hmg20b Mus musculus ENSMUSG00000020232 D 0.000
Sox17 Mus musculus ENSMUSG00000025902 D 0.000
Myotis_brandtii_TFAM_10031378 Myotis brandtii Myotis_brandtii_TFAM_10031378 N 0.000
Myotis_brandtii_TIMM8A_10019481 Myotis brandtii Myotis_brandtii_TIMM8A_10019481 N 0.000
Myotis_brandtii_Hmgb2_10029741 Myotis brandtii Myotis_brandtii_Hmgb2_10029741 N 0.000
SOX9 Myotis lucifugus ENSMLUG00000030312 I 0.000
ENSNLEG00000002693 Nomascus leucogenys ENSNLEG00000002693 N 0.000
OESDEN_19415 Oesophagostomum dentatum OESDEN_19415 N 0.000
Ogr00751 Ophisaurus gracilis Ogr00751 I 0.000
Ogr08337 Ophisaurus gracilis Ogr08337 N 0.000
Ogr13852 Ophisaurus gracilis Ogr13852 N 0.000
Ogr11176 Ophisaurus gracilis Ogr11176 N 0.000
ENSOANG00000002448 Ornithorhynchus anatinus ENSOANG00000002448 I 0.000
ENSOANG00000011188 Ornithorhynchus anatinus ENSOANG00000011188 I 0.000
SOX18 Pan troglodytes ENSPTRG00000030459 I 0.000
PEQ_0000549401 Parascaris equorum PEQ_0000549401 N 0.000
PHUM433280 Pediculus humanus PHUM433280 N 0.000
ENSPSIG00000016857 Pelodiscus sinensis ENSPSIG00000016857 N 0.000
ENSPMAG00000004519 Petromyzon marinus ENSPMAG00000004519 N 0.000
PPAI005428 Phlebotomus papatasi PPAI005428 N 0.000
fgenesh1_pm.C_scaffold_23000166 Phytophthora capsici fgenesh1_pm.C_scaffold_23000166 N 0.000
fgenesh_scip_prom.28083.3150 Phytophthora lateralis fgenesh_scip_prom.28083.3150 N 0.000
F443_09320 Phytophthora parasitica F443_09320 N 0.000
Phyra76615 Phytophthora ramorum Phyra76615 N 0.000
Physo127875 Phytophthora sojae Physo127875 N 0.000
JL09_g5343 Pichia kudriavzevii JL09_g5343 N 0.000
M404DRAFT_787968 Pisolithus tinctorius M404DRAFT_787968 N 0.000
PLEOSDRAFT_1017219 Pleurotus ostreatus PLEOSDRAFT_1017219 N 0.000
PredSwiss_CON1835.1 Pneumocystis carinii PredSwiss_CON1835.1 N 0.000
PredSwiss_ASS2010_3779.1 Pneumocystis carinii PredSwiss_ASS2010_3779.1 N 0.000
EFA85451.1 Polysphondylium pallidum EFA85451.1 N 0.000
PPA11045 Pristionchus pacificus PPA11045 N 0.000
SOX2 Procavia capensis ENSPCAG00000003690 I 0.000
SOX18 Procavia capensis ENSPCAG00000015663 N 0.000
PSEUBRA_SCAF2g02551 Pseudozyma brasiliensis PSEUBRA_SCAF2g02551 N 0.000
GLOINDRAFT_335861 Rhizophagus irregularis GLOINDRAFT_335861 N 0.000
GLOINDRAFT_271935 Rhizophagus irregularis GLOINDRAFT_271935 N 0.000
GLOINDRAFT_83691 Rhizophagus irregularis GLOINDRAFT_83691 N 0.000
RPRC001038 Rhodnius prolixus RPRC001038 N 0.000
SapurV1A.0237s0190 Salix purpurea SapurV1A.0237s0190 N 0.000
ENSSHAG00000008406 Sarcophilus harrisii ENSSHAG00000008406 I 0.000
SMU15030186 Schmidtea mediterranea SMU15030186 N 0.000
SCLCIDRAFT_59496 Scleroderma citrinum SCLCIDRAFT_59496 N 0.000
SINV19749 Solenopsis invicta SINV19749 N 0.000
SINV16572 Solenopsis invicta SINV16572 N 0.000
SOX17 Sorex araneus ENSSARG00000009573 I 0.000
M422DRAFT_54734 Sphaerobolus stellatus M422DRAFT_54734 N 0.000
L898_g4879 Steinernema monticolum L898_g4879 N 0.000
SMAR010125 Strigamia maritima SMAR010125 N 0.000
SMAR007058 Strigamia maritima SMAR007058 N 0.000
ENSTSYG00000001164 Tarsius syrichta ENSTSYG00000001164 I 0.000
ENSTSYG00000006321 Tarsius syrichta ENSTSYG00000006321 I 0.000
sox9a Tetraodon nigroviridis ENSTNIG00000001901 N 0.000
TCNE_0000669501 Toxocara canis TCNE_0000669501 N 0.000
TC009856 Tribolium castaneum TC009856 N 0.000
TVAG_114290 Trichomonas vaginalis TVAG_114290 N 0.000
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.000
TcIL3000.10.440 Trypanosoma congolense TcIL3000.10.440 N 0.000
SOX9 Tupaia belangeri ENSTBEG00000000175 N 0.000
ENSTTRG00000015548 Tursiops truncatus ENSTTRG00000015548 I 0.000
VDBG_04936 Verticillium albo atrum VDBG_04936 N 0.000
VDBG_04936 Verticillium alfalfae VDBG_04936 N 0.000
WALSEDRAFT_59420 Wallemia sebi WALSEDRAFT_59420 N 0.000
WUBG_12101 Wuchereria bancrofti WUBG_12101 N 0.000
L798_05432 Zootermopsis nevadensis L798_05432 N 0.000
L798_12046 Zootermopsis nevadensis L798_12046 N 0.000
L798_00185 Zootermopsis nevadensis L798_00185 N 0.000