ENSAPLG00000004160 (Anas platyrhynchos)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSAPLG00000004160 T197967_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.993 0.993
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.891 0.891
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.884 0.884
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.877 0.877
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.877 0.877
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.877 0.877
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.877 0.877
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.877 0.877
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.877 0.877
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.877 0.877
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.877 0.877
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.877 0.877
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.855 0.855
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.739 0.739
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.725 0.725
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.710 0.710
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.696 0.696
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.696 0.696
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.696 0.696
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.696 0.696
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.609 0.609
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.609 0.609
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000003658 GCM 39 176

Links

Other GCM family TFs
Other Anas platyrhynchos TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013892 Ailuropoda melanoleuca ENSAMEG00000013892 I 0.000
ENSBTAP00000031815-D1 Bos grunniens ENSBTAP00000031815-D1 I 0.000
IRF3 Bos taurus ENSBTAG00000006633 I 0.000
IRF3 Callithrix jacchus ENSCJAG00000003637 I 0.000
IRF3 Cavia porcellus ENSCPOG00000026146 I 0.000
ENSCSAG00000002477 Chlorocebus sabaeus ENSCSAG00000002477 I 0.000
IRF3 Dasypus novemcinctus ENSDNOG00000040858 I 0.000
IRF3 Equus caballus ENSECAG00000018265 I 0.000
IRF3 Felis catus ENSFCAG00000006074 I 0.000
IRF3 Gorilla gorilla ENSGGOG00000000499 I 0.000
IRF3 Homo sapiens ENSG00000126456 D 0.000
ENSSTOG00000022900 Ictidomys tridecemlineatus ENSSTOG00000022900 I 0.000
ENSMMUP00000031524 Macaca fascicularis ENSMMUP00000031524 I 0.000
IRF3 Macaca mulatta ENSMMUG00000022735 I 0.000
ENSMPUG00000002477 Mustela putorius furo ENSMPUG00000002477 I 0.000
Irf3 Mus musculus ENSMUSG00000003184 D 0.000
Myotis_brandtii_IRF3_10017659 Myotis brandtii Myotis_brandtii_IRF3_10017659 I 0.000
IRF3 Myotis lucifugus ENSMLUG00000023427 I 0.000
IRF3 Oryctolagus cuniculus ENSOCUG00000027558 I 0.000
IRF3 Otolemur garnettii ENSOGAG00000011935 I 0.000
ENSOARG00000013335 Ovis aries ENSOARG00000013335 I 0.000
ENSPTRG00000011309 Pan troglodytes ENSPTRG00000011309 I 0.000
ENSPANG00000014697 Papio anubis ENSPANG00000014697 I 0.000
ENSPPYG00000010260 Pongo abelii ENSPPYG00000010260 I 0.000
IRF3 Procavia capensis ENSPCAG00000008633 I 0.000
IRF3 Pteropus vampyrus ENSPVAG00000010968 I 0.000
Irf3 Rattus norvegicus ENSRNOG00000043388 I 0.000
IRF3 Sorex araneus ENSSARG00000006248 I 0.000
IRF3 Sus scrofa ENSSSCG00000003178 I 0.000
IRF3 Tursiops truncatus ENSTTRG00000005531 I 0.000