GCM2 (Choloepus hoffmanni)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSCHOG00000011562 T197973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.949 0.949
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.949 0.949
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.949 0.949
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.949 0.949
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.870 0.870
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.833 0.833
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.826 0.826
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.703 0.703
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.703 0.703
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.696 0.696
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.688 0.688
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.688 0.688
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.688 0.688
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.688 0.688
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.688 0.688
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.688 0.688
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.688 0.688
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.688 0.688
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.688 0.688
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.681 0.681
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.667 0.667
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.667 0.667
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.667 0.667
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.652 0.652
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.652 0.652
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.652 0.652
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000010213 GCM 35 172

Links

Other GCM family TFs
Other Choloepus hoffmanni TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM2 Felis catus ENSFCAG00000001608 I 0.986
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.978
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.978
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.978
GCM2 Canis familiaris ENSCAFG00000009747 I 0.971
GCM2 Equus caballus ENSECAG00000017632 I 0.971
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.964
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.964
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.957
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.957
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.957
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.957
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.957
GCM2 Homo sapiens ENSG00000124827 D 0.949
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.949
GCM2 Bos taurus ENSBTAG00000018787 I 0.949
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.949
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.949
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.949
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.949
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.949
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.942
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.942
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.935
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.935
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.935
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.935
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.935
GCM2 Echinops telfairi ENSETEG00000012473 I 0.932
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.928
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.928
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.928
Gcm2 Mus musculus ENSMUSG00000021362 I 0.928
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.928
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.920
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.913
GCM2 Procavia capensis ENSPCAG00000011887 I 0.906
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.906
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.884
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.884
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.877
Aan_R001550 Calypte anna Aan_R001550 I 0.877
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.870
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.870
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.870
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.862
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.862
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.855
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.855
gcm2 Danio rerio ENSDARG00000045413 I 0.848
GCM2 Gallus gallus ENSGALG00000012768 I 0.848
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.848
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.841
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.841
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.841
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.833
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.833
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.833
gcm2.S Xenopus laevis XB-GENE-866131 I 0.833
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.833
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.833
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.833
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.833
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.826
gcm2 Oryzias latipes ENSORLG00000019715 I 0.826
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.819
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.819
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.746
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.725
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.725
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.720
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.716
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.712
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.710
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.703
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.703
Gcm1 Mus musculus ENSMUSG00000023333 D 0.703
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.703
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.696
AGAP007783 Anopheles gambiae AGAP007783 I 0.696
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.696
MCINX011946 Melitaea cinxia MCINX011946 I 0.696
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.696
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.696
HMEL005671 Heliconius melpomene HMEL005671 I 0.696
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.696
SMAR010130 Strigamia maritima SMAR010130 I 0.695
TC014730 Tribolium castaneum TC014730 I 0.693
AALB008013 Anopheles albimanus AALB008013 I 0.688
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.688
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.688
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.688
GCM1 Bos taurus ENSBTAG00000008148 I 0.688
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.688
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.688
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.688
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.688
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.688
GCM1 Equus caballus ENSECAG00000014228 I 0.688
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.688
GCM1 Homo sapiens ENSG00000137270 D 0.688
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.688
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.688
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.688
AMIN006368 Anopheles minimus AMIN006368 I 0.688
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.688
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.688
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.688
KGM_05743 Danaus plexippus KGM_05743 I 0.686
ACHR001414 Anopheles christyi ACHR001414 I 0.686
AAEL000623 Aedes aegypti AAEL000623 I 0.686
AEPI007160 Anopheles epiroticus AEPI007160 I 0.686
Aan_R001196 Calypte anna Aan_R001196 I 0.681
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.681
AFAF005680 Anopheles farauti AFAF005680 I 0.681
GCM1 Gallus gallus ENSGALG00000016316 I 0.681
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.681
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.681
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.681
GCM1 Felis catus ENSFCAG00000009490 I 0.681
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.681
GCM1 Canis familiaris ENSCAFG00000002273 I 0.681
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.681
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.681
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.681
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.681
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.681
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.681
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.681
Tal_R009935 Tyto alba Tal_R009935 I 0.681
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.681
AMAM003661 Anopheles maculatus AMAM003661 I 0.679
AARA011980 Anopheles arabiensis AARA011980 I 0.679
AFUN009837 Anopheles funestus AFUN009837 I 0.679
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.679
ACUA009622 Anopheles culicifacies ACUA009622 I 0.679
ADIR000711 Anopheles dirus ADIR000711 I 0.679
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.679
ACOM031025 Anopheles coluzzii ACOM031025 I 0.678
AMEM005966 Anopheles merus AMEM005966 I 0.678
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.674
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.674
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.674
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.674
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.674
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.674
ASIS002985 Anopheles sinensis ASIS002985 I 0.671
ACEP23384 Atta cephalotes ACEP23384 I 0.671
SINV21711 Solenopsis invicta SINV21711 I 0.671
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.671
AATE008476 Anopheles atroparvus AATE008476 I 0.671
GB45031 Apis mellifera GB45031 I 0.671
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.671
ADAC002327 Anopheles darlingi ADAC002327 I 0.671
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.671
GCM2 Erinaceus europaeus ENSEEUG00000005577 I 0.670
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.669
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.667
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.667
GF22779 Drosophila ananassae FBgn0099773 I 0.667
ISCW022914 Ixodes scapularis ISCW022914 I 0.667
GG10041 Drosophila erecta FBgn0102353 I 0.667
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.664
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.664
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.664
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.664
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.664
AMEC020313 Anopheles melas AMEC020313 I 0.664
AMAM005757 Anopheles maculatus AMAM005757 I 0.661
GJ17916 Drosophila virilis FBgn0205084 I 0.659
Tal_R009965 Tyto alba Tal_R009965 I 0.659
MDOA003644 Musca domestica MDOA003644 I 0.659
GI17574 Drosophila mojavensis FBgn0140318 I 0.659
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.659
GJ18313 Drosophila virilis FBgn0205472 I 0.659
L798_07938 Zootermopsis nevadensis L798_07938 I 0.659
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.659
PHUM436840 Pediculus humanus PHUM436840 I 0.659
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.658
CLEC013329 Cimex lectularius CLEC013329 I 0.657
RPRC001299 Rhodnius prolixus RPRC001299 I 0.657
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.657
GE18856 Drosophila yakuba FBgn0236239 I 0.657
GL18919 Drosophila persimilis FBgn0156520 I 0.657
gcm Drosophila melanogaster FBgn0014179 D 0.652
AALB008012 Anopheles albimanus AALB008012 I 0.652
GM12386 Drosophila sechellia FBgn0167323 I 0.652
NV17454 Nasonia vitripennis NV17454 I 0.652
GM17569 Drosophila sechellia FBgn0172477 I 0.650
GF21907 Drosophila ananassae FBgn0098907 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.650
MDOA004732 Musca domestica MDOA004732 I 0.650
LCUP008083 Lucilia cuprina LCUP008083 I 0.650
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.645
GK23810 Drosophila willistoni FBgn0225772 I 0.645
GL19218 Drosophila persimilis FBgn0156817 I 0.643
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.643
GK23867 Drosophila willistoni FBgn0225829 I 0.638
GH10675 Drosophila grimshawi FBgn0118156 I 0.636
GG24019 Drosophila erecta FBgn0116158 I 0.636
GH11056 Drosophila grimshawi FBgn0118537 I 0.636
GE10457 Drosophila yakuba FBgn0228318 I 0.636
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.631
ASIS021139 Anopheles sinensis ASIS021139 I 0.629
CapteG133139 Capitella teleta CapteG133139 I 0.625
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.623
ACOM031032 Anopheles coluzzii ACOM031032 I 0.623
AMEM008520 Anopheles merus AMEM008520 I 0.623
AEPI007161 Anopheles epiroticus AEPI007161 I 0.623
AGAP007782 Anopheles gambiae AGAP007782 I 0.623
AARA011979 Anopheles arabiensis AARA011979 I 0.623
AAEL000631 Aedes aegypti AAEL000631 I 0.621
GD22349 Drosophila simulans FBgn0193756 I 0.621
HelroG145480 Helobdella robusta HelroG145480 I 0.621
AATE020589 Anopheles atroparvus AATE020589 I 0.621
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.614
AFAF000663 Anopheles farauti AFAF000663 I 0.614
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.614
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.614
LotgiG112320 Lottia gigantea LotgiG112320 I 0.614
AMIN006367 Anopheles minimus AMIN006367 I 0.614
ACUA018162 Anopheles culicifacies ACUA018162 I 0.614
ACHR004082 Anopheles christyi ACHR004082 I 0.614
ADIR000710 Anopheles dirus ADIR000710 I 0.614
AFUN009836 Anopheles funestus AFUN009836 I 0.614