GCM2 (Callithrix jacchus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSCJAG00000019182 T197975_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.971 0.971
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.971 0.971
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.971 0.971
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.971 0.971
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.877 0.877
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.833 0.833
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.826 0.826
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.710 0.710
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.710 0.710
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.703 0.703
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.696 0.696
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.696 0.696
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.696 0.696
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.696 0.696
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.696 0.696
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.696 0.696
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.696 0.696
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.696 0.696
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.696 0.696
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.696 0.696
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.674 0.674
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.674 0.674
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.674 0.674
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.659 0.659
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.659 0.659
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.659 0.659
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.659 0.659
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000035607 GCM 6 143

Links

Other GCM family TFs
Other Callithrix jacchus TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000000263 Ailuropoda melanoleuca ENSAMEG00000000263 N 0.000
MYSM1 Anolis carolinensis ENSACAG00000005486 N 0.000
ENSAMXG00000013289 Astyanax mexicanus ENSAMXG00000013289 N 0.000
ENSP00000418734-D1 Bos grunniens ENSP00000418734-D1 N 0.000
MYSM1 Bos taurus ENSBTAG00000013961 N 0.000
MYSM1 Callithrix jacchus ENSCJAG00000016020 N 0.000
Aan_R000627 Calypte anna Aan_R000627 N 0.000
MYSM1 Cavia porcellus ENSCPOG00000006557 N 0.000
ENSCSAG00000001326 Chlorocebus sabaeus ENSCSAG00000001326 N 0.000
MYSM1 Choloepus hoffmanni ENSCHOG00000006619 N 0.000
mysm1 Danio rerio ENSDARG00000034693 N 0.000
MYSM1 Dasypus novemcinctus ENSDNOG00000009991 N 0.000
ENSDORG00000005983 Dipodomys ordii ENSDORG00000005983 N 0.000
MYSM1 Felis catus ENSFCAG00000026572 N 0.000
ENSFALG00000012350 Ficedula albicollis ENSFALG00000012350 N 0.000
MYSM1 Gallus gallus ENSGALG00000010869 N 0.000
Gfo_R010197 Geospiza fortis Gfo_R010197 N 0.000
MYSM1 Gorilla gorilla ENSGGOG00000005238 N 0.000
MYSM1 Homo sapiens ENSG00000162601 N 0.000
ENSSTOG00000024678 Ictidomys tridecemlineatus ENSSTOG00000024678 N 0.000
ENSLACG00000002536 Latimeria chalumnae ENSLACG00000002536 N 0.000
ENSLOCG00000008884 Lepisosteus oculatus ENSLOCG00000008884 N 0.000
MYSM1 Loxodonta africana ENSLAFG00000003849 N 0.000
ENSP00000418734 Macaca fascicularis ENSP00000418734 N 0.000
MYSM1 Macaca mulatta ENSMMUG00000011800 N 0.000
MYSM1 Meleagris gallopavo ENSMGAG00000011514 N 0.000
MYSM1 Monodelphis domestica ENSMODG00000003341 N 0.000
ENSMPUG00000007462 Mustela putorius furo ENSMPUG00000007462 N 0.000
Mysm1 Mus musculus ENSMUSG00000062627 N 0.000
Myotis_brandtii_MYSM1_10020945 Myotis brandtii Myotis_brandtii_MYSM1_10020945 N 0.000
MYSM1 Myotis lucifugus ENSMLUG00000001665 N 0.000
ENSNLEG00000014766 Nomascus leucogenys ENSNLEG00000014766 N 0.000
Ogr14877 Ophisaurus gracilis Ogr14877 N 0.000
ENSONIG00000002787 Oreochromis niloticus ENSONIG00000002787 N 0.000
ENSOCUG00000029356 Oryctolagus cuniculus ENSOCUG00000029356 N 0.000
MYSM1 Otolemur garnettii ENSOGAG00000004571 N 0.000
ENSOARG00000008464 Ovis aries ENSOARG00000008464 N 0.000
MYSM1 Pan troglodytes ENSPTRG00000000796 N 0.000
ENSPANG00000021852 Papio anubis ENSPANG00000021852 N 0.000
ENSPSIG00000003847 Pelodiscus sinensis ENSPSIG00000003847 N 0.000
Pvit_02365 Pogona vitticeps Pvit_02365 N 0.000
ENSPPYG00000001296 Pongo abelii ENSPPYG00000001296 N 0.000
MYSM1 Pteropus vampyrus ENSPVAG00000012800 N 0.000
Mysm1 Rattus norvegicus ENSRNOG00000026299 N 0.000
ENSSHAG00000013607 Sarcophilus harrisii ENSSHAG00000013607 N 0.000
MYSM1 Sorex araneus ENSSARG00000003002 N 0.000
MYSM1 Sus scrofa ENSSSCG00000003830 N 0.000
ENSTGUG00000009663 Taeniopygia guttata ENSTGUG00000009663 N 0.000
ENSTSYG00000003664 Tarsius syrichta ENSTSYG00000003664 N 0.000
MYSM1 Tursiops truncatus ENSTTRG00000005999 N 0.000
MYSM1 Vicugna pacos ENSVPAG00000007237 N 0.000
mysm1.L Xenopus laevis XB-GENE-1032962 N 0.000
mysm1 Xenopus tropicalis XB-GENE-1032957 N 0.000