gcm2 (Danio rerio)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSDARG00000045413 T197980_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.920 0.920
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.906 0.906
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.891 0.891
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.855 0.855
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.855 0.855
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.855 0.855
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.855 0.855
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.761 0.761
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.754 0.754
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.754 0.754
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.754 0.754
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.739 0.739
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.739 0.739
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.739 0.739
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.739 0.739
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.739 0.739
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.739 0.739
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.739 0.739
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.739 0.739
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.739 0.739
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.667 0.667
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.667 0.667
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.667 0.667
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.659 0.659
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.659 0.659
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.659 0.659
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.659 0.659
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000066779 GCM 37 174
ENSDARP00000113822 GCM 19 156

Links

Other GCM family TFs
Other Danio rerio TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000623 Aedes aegypti AAEL000623 I 0.700
AAEL000631 Aedes aegypti AAEL000631 I 0.643
AALB008012 Anopheles albimanus AALB008012 I 0.659
AALB008013 Anopheles albimanus AALB008013 I 0.667
Aan_R001196 Calypte anna Aan_R001196 I 0.746
Aan_R001550 Calypte anna Aan_R001550 I 0.899
AARA011979 Anopheles arabiensis AARA011979 I 0.638
AARA011980 Anopheles arabiensis AARA011980 I 0.693
AATE008476 Anopheles atroparvus AATE008476 I 0.671
AATE020589 Anopheles atroparvus AATE020589 I 0.650
ACEP23384 Atta cephalotes ACEP23384 I 0.664
ACHR001414 Anopheles christyi ACHR001414 I 0.693
ACHR004082 Anopheles christyi ACHR004082 I 0.629
ACOM031025 Anopheles coluzzii ACOM031025 I 0.701
ACOM031032 Anopheles coluzzii ACOM031032 I 0.638
ACUA009622 Anopheles culicifacies ACUA009622 I 0.700
ACUA018162 Anopheles culicifacies ACUA018162 I 0.629
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.650
ADAC002327 Anopheles darlingi ADAC002327 I 0.657
ADIR000710 Anopheles dirus ADIR000710 I 0.614
ADIR000711 Anopheles dirus ADIR000711 I 0.679
AEPI007160 Anopheles epiroticus AEPI007160 I 0.693
AEPI007161 Anopheles epiroticus AEPI007161 I 0.638
AFAF000663 Anopheles farauti AFAF000663 I 0.621
AFAF005680 Anopheles farauti AFAF005680 I 0.696
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.754
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.899
AFUN009836 Anopheles funestus AFUN009836 I 0.629
AFUN009837 Anopheles funestus AFUN009837 I 0.686
AGAP007782 Anopheles gambiae AGAP007782 I 0.638
AGAP007783 Anopheles gambiae AGAP007783 I 0.710
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.692
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.862
AMAM003661 Anopheles maculatus AMAM003661 I 0.693
AMAM005757 Anopheles maculatus AMAM005757 I 0.661
AMEC020313 Anopheles melas AMEC020313 I 0.679
AMEM005966 Anopheles merus AMEM005966 I 0.701
AMEM008520 Anopheles merus AMEM008520 I 0.638
AMIN006367 Anopheles minimus AMIN006367 I 0.629
AMIN006368 Anopheles minimus AMIN006368 I 0.710
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.638
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.710
ASIS002985 Anopheles sinensis ASIS002985 I 0.671
ASIS021139 Anopheles sinensis ASIS021139 I 0.657
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.693
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.629
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.686
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.754
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.891
CapteG133139 Capitella teleta CapteG133139 I 0.625
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.657
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.679
CLEC013329 Cimex lectularius CLEC013329 I 0.679
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.899
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.621
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.686
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.621
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.686
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.667
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.763
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.848
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.746
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.928
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.891
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.746
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.732
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.754
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.855
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.739
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.638
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.746
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.899
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.870
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.725
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.920
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.920
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.725
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.754
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.725
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.862
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.855
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.746
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.855
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.739
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.732
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.855
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.942
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.739
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.855
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.855
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.862
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.913
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.797
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.855
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.739
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.906
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.754
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.877
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.761
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.732
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.848
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.746
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.746
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.754
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.940
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.920
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.732
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.855
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.913
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.650
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.643
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.643
GB45031 Apis mellifera GB45031 I 0.664
gcm Drosophila melanogaster FBgn0014179 D 0.659
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.746
GCM1 Gallus gallus ENSGALG00000016316 I 0.746
GCM1 Homo sapiens ENSG00000137270 D 0.739
GCM1 Felis catus ENSFCAG00000009490 I 0.746
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.804
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.739
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.732
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.759
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.732
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.739
GCM1 Canis familiaris ENSCAFG00000002273 I 0.746
GCM1 Bos taurus ENSBTAG00000008148 I 0.732
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.739
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.757
GCM1 Equus caballus ENSECAG00000014228 I 0.761
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.754
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.725
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.746
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.728
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.732
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.761
Gcm1 Mus musculus ENSMUSG00000023333 D 0.761
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.739
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.739
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.754
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.710
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.913
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.855
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.884
gcm2 Oryzias latipes ENSORLG00000019715 I 0.920
Gcm2 Mus musculus ENSMUSG00000021362 I 0.833
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.877
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.841
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.848
GCM2 Procavia capensis ENSPCAG00000011887 I 0.804
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.848
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.797
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.841
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.848
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.906
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.891
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.833
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.848
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.841
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.855
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.833
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.870
GCM2 Equus caballus ENSECAG00000017632 I 0.848
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.870
GCM2 Bos taurus ENSBTAG00000018787 I 0.855
GCM2 Canis familiaris ENSCAFG00000009747 I 0.848
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.848
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.862
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.833
GCM2 Echinops telfairi ENSETEG00000012473 I 0.788
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.855
GCM2 Felis catus ENSFCAG00000001608 I 0.855
GCM2 Homo sapiens ENSG00000124827 D 0.855
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.920
GCM2 Gallus gallus ENSGALG00000012768 I 0.877
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.819
gcm2.S Xenopus laevis XB-GENE-866131 I 0.913
GD22349 Drosophila simulans FBgn0193756 I 0.621
GE10457 Drosophila yakuba FBgn0228318 I 0.650
GE18856 Drosophila yakuba FBgn0236239 I 0.664
GF21907 Drosophila ananassae FBgn0098907 I 0.657
GF22779 Drosophila ananassae FBgn0099773 I 0.667
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.899
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.754
GG10041 Drosophila erecta FBgn0102353 I 0.667
GG24019 Drosophila erecta FBgn0116158 I 0.650
GH10675 Drosophila grimshawi FBgn0118156 I 0.643
GH11056 Drosophila grimshawi FBgn0118537 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
GI17574 Drosophila mojavensis FBgn0140318 I 0.652
GJ17916 Drosophila virilis FBgn0205084 I 0.645
GJ18313 Drosophila virilis FBgn0205472 I 0.659
GK23810 Drosophila willistoni FBgn0225772 I 0.638
GK23867 Drosophila willistoni FBgn0225829 I 0.638
GL18919 Drosophila persimilis FBgn0156520 I 0.643
GL19218 Drosophila persimilis FBgn0156817 I 0.643
GM12386 Drosophila sechellia FBgn0167323 I 0.659
GM17569 Drosophila sechellia FBgn0172477 I 0.650
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
HelroG145480 Helobdella robusta HelroG145480 I 0.612
HMEL005671 Heliconius melpomene HMEL005671 I 0.688
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.657
ISCW022914 Ixodes scapularis ISCW022914 I 0.645
KGM_05743 Danaus plexippus KGM_05743 I 0.679
L798_07938 Zootermopsis nevadensis L798_07938 I 0.688
LCUP008083 Lucilia cuprina LCUP008083 I 0.643
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.671
MCINX011946 Melitaea cinxia MCINX011946 I 0.679
MDOA003644 Musca domestica MDOA003644 I 0.657
MDOA004732 Musca domestica MDOA004732 I 0.650
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.746
NV17454 Nasonia vitripennis NV17454 I 0.659
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.671
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.803
PHUM436840 Pediculus humanus PHUM436840 I 0.650
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.657
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.783
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.891
RPRC001299 Rhodnius prolixus RPRC001299 I 0.671
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.674
SINV21711 Solenopsis invicta SINV21711 I 0.657
SMAR010130 Strigamia maritima SMAR010130 I 0.712
Tal_R009935 Tyto alba Tal_R009935 I 0.754
Tal_R009965 Tyto alba Tal_R009965 I 0.683
TC014730 Tribolium castaneum TC014730 I 0.664
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.657
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.759
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.681