GCM1 (Erinaceus europaeus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSEEUG00000013606 T197989_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.931 0.931
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.931 0.931
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.931 0.931
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.931 0.931
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.931 0.931
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.931 0.931
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.931 0.931
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.931 0.931
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.931 0.931
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.931 0.931
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.931 0.931
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.922 0.922
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.843 0.843
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.765 0.765
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.755 0.755
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.755 0.755
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.725 0.725
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.725 0.725
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.725 0.725
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.725 0.725
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.667 0.667
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.667 0.667
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.667 0.667
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.627 0.627
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.627 0.627
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.627 0.627
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.627 0.627
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000012393 GCM 1 109

Links

Other GCM family TFs
Other Erinaceus europaeus TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.951
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.951
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.941
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.941
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.941
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.941
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.931
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.931
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.931
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.931
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.931
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.931
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.931
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.931
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.931
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.931
GCM1 Homo sapiens ENSG00000137270 D 0.931
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.931
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.922
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.922
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.922
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.912
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.902
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.902
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.892
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.892
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.873
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.853
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.843
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.843
Aan_R001196 Calypte anna Aan_R001196 I 0.843
GCM1 Gallus gallus ENSGALG00000016316 I 0.843
Tal_R009935 Tyto alba Tal_R009935 I 0.843
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.833
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.833
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.824
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.804
gcm2 Danio rerio ENSDARG00000045413 I 0.804
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.794
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.784
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.775
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.765
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.765
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.765
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.765
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.765
Aan_R001550 Calypte anna Aan_R001550 I 0.765
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.765
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.765
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.755
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.755
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.755
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.755
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.755
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.755
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.755
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.755
GCM2 Gallus gallus ENSGALG00000012768 I 0.755
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.748
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.735
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.735
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.735
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.735
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.735
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.735
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.735
GCM2 Bos taurus ENSBTAG00000018787 I 0.735
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.725
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.725
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.725
GCM2 Felis catus ENSFCAG00000001608 I 0.725
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.725
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.725
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.725
GCM2 Canis familiaris ENSCAFG00000009747 I 0.725
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.725
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.716
GCM2 Equus caballus ENSECAG00000017632 I 0.716
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.716
GCM1 Canis familiaris ENSCAFG00000002273 I 0.710
GCM1 Felis catus ENSFCAG00000009490 I 0.710
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.710
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.706
GCM1 Bos taurus ENSBTAG00000008148 I 0.688
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.688
GCM1 Equus caballus ENSECAG00000014228 I 0.688
Gcm1 Mus musculus ENSMUSG00000023333 D 0.688
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.688
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.688
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.688
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.686
AAEL000623 Aedes aegypti AAEL000623 I 0.686
GCM2 Procavia capensis ENSPCAG00000011887 I 0.686
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.686
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.681
AARA011980 Anopheles arabiensis AARA011980 I 0.667
GJ18313 Drosophila virilis FBgn0205472 I 0.667
AGAP007783 Anopheles gambiae AGAP007783 I 0.667
AMIN006368 Anopheles minimus AMIN006368 I 0.667
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.667
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.667
GF22779 Drosophila ananassae FBgn0099773 I 0.667
GG10041 Drosophila erecta FBgn0102353 I 0.667
AMAM003661 Anopheles maculatus AMAM003661 I 0.667
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.667
AFUN009837 Anopheles funestus AFUN009837 I 0.667
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.657
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.657
ADIR000711 Anopheles dirus ADIR000711 I 0.657
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.657
L798_07938 Zootermopsis nevadensis L798_07938 I 0.657
AFAF005680 Anopheles farauti AFAF005680 I 0.657
AALB008013 Anopheles albimanus AALB008013 I 0.657
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.647
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.647
MDOA003644 Musca domestica MDOA003644 I 0.647
MCINX011946 Melitaea cinxia MCINX011946 I 0.647
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.647
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.647
GK23867 Drosophila willistoni FBgn0225829 I 0.647
HMEL005671 Heliconius melpomene HMEL005671 I 0.647
PHUM436840 Pediculus humanus PHUM436840 I 0.647
GL18919 Drosophila persimilis FBgn0156520 I 0.647
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.645
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.638
LCUP008083 Lucilia cuprina LCUP008083 I 0.637
MDOA004732 Musca domestica MDOA004732 I 0.627
AALB008012 Anopheles albimanus AALB008012 I 0.627
gcm Drosophila melanogaster FBgn0014179 D 0.627
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.627
LotgiG112320 Lottia gigantea LotgiG112320 I 0.627
CapteG133139 Capitella teleta CapteG133139 I 0.627
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.627
GM12386 Drosophila sechellia FBgn0167323 I 0.627
NV17454 Nasonia vitripennis NV17454 I 0.627
SINV21711 Solenopsis invicta SINV21711 I 0.627
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.627
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.623
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.623
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.618
AMEM008520 Anopheles merus AMEM008520 I 0.618
AFAF000663 Anopheles farauti AFAF000663 I 0.618
AARA011979 Anopheles arabiensis AARA011979 I 0.618
AGAP007782 Anopheles gambiae AGAP007782 I 0.618
ACOM031032 Anopheles coluzzii ACOM031032 I 0.618
ISCW022914 Ixodes scapularis ISCW022914 I 0.618
GK23810 Drosophila willistoni FBgn0225772 I 0.618
AEPI007161 Anopheles epiroticus AEPI007161 I 0.618
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.609
GI17574 Drosophila mojavensis FBgn0140318 I 0.608
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.608
GJ17916 Drosophila virilis FBgn0205084 I 0.608