GCM2 (Echinops telfairi)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSETEG00000012473 T197991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.898 0.898
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.898 0.898
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.898 0.898
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.898 0.898
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.822 0.822
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.797 0.797
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.788 0.788
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.686 0.686
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.686 0.686
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.686 0.686
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.678 0.678
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.678 0.678
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.669 0.669
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.661 0.661
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.661 0.661
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.661 0.661
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.661 0.661
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.661 0.661
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.661 0.661
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.661 0.661
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.661 0.661
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.661 0.661
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.661 0.661
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.644 0.644
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.644 0.644
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.644 0.644
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.644 0.644
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000010115 GCM 35 159

Links

Other GCM family TFs
Other Echinops telfairi TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.949
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.941
GCM2 Felis catus ENSFCAG00000001608 I 0.932
GCM2 Equus caballus ENSECAG00000017632 I 0.932
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.932
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.924
GCM2 Canis familiaris ENSCAFG00000009747 I 0.924
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.915
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.907
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.907
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.907
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.898
GCM2 Bos taurus ENSBTAG00000018787 I 0.898
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.898
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.898
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.898
GCM2 Procavia capensis ENSPCAG00000011887 I 0.898
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.898
GCM2 Homo sapiens ENSG00000124827 D 0.898
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.890
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.890
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.890
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.890
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.890
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.881
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.881
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.881
Gcm2 Mus musculus ENSMUSG00000021362 I 0.881
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.873
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.873
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.873
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.864
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.856
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.847
Aan_R001550 Calypte anna Aan_R001550 I 0.831
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.822
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.822
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.822
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.822
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.814
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.814
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.805
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.805
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.805
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.805
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.805
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.805
GCM2 Gallus gallus ENSGALG00000012768 I 0.805
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.797
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.797
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.790
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.788
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.788
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.788
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.788
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.788
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.788
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.788
gcm2 Danio rerio ENSDARG00000045413 I 0.788
gcm2.S Xenopus laevis XB-GENE-866131 I 0.780
gcm2 Oryzias latipes ENSORLG00000019715 I 0.780
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.775
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.775
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.775
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.771
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.763
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.737
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.703
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.703
MCINX011946 Melitaea cinxia MCINX011946 I 0.703
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.703
HMEL005671 Heliconius melpomene HMEL005671 I 0.703
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.688
AAEL000623 Aedes aegypti AAEL000623 I 0.686
GG10041 Drosophila erecta FBgn0102353 I 0.686
GE18856 Drosophila yakuba FBgn0236239 I 0.686
GL18919 Drosophila persimilis FBgn0156520 I 0.686
GF22779 Drosophila ananassae FBgn0099773 I 0.686
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.686
gcm2 Drosophila melanogaster FBgn0019809 D 0.686
GJ18313 Drosophila virilis FBgn0205472 I 0.686
Tal_R009935 Tyto alba Tal_R009935 I 0.686
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.686
AALB008013 Anopheles albimanus AALB008013 I 0.678
AFUN009837 Anopheles funestus AFUN009837 I 0.678
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.678
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.678
GM17569 Drosophila sechellia FBgn0172477 I 0.678
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.678
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.678
AMAM003661 Anopheles maculatus AMAM003661 I 0.678
AMIN006368 Anopheles minimus AMIN006368 I 0.678
AGAP007783 Anopheles gambiae AGAP007783 I 0.678
ADIR000711 Anopheles dirus ADIR000711 I 0.678
Aan_R001196 Calypte anna Aan_R001196 I 0.669
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.669
AARA011980 Anopheles arabiensis AARA011980 I 0.669
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.669
GCM1 Gallus gallus ENSGALG00000016316 I 0.669
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.669
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.669
AFAF005680 Anopheles farauti AFAF005680 I 0.669
AATE008476 Anopheles atroparvus AATE008476 I 0.669
LCUP008083 Lucilia cuprina LCUP008083 I 0.669
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.669
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.669
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.669
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.669
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.669
ASIS002985 Anopheles sinensis ASIS002985 I 0.669
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.669
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.669
MDOA003644 Musca domestica MDOA003644 I 0.669
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.669
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.669
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.669
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.661
SINV21711 Solenopsis invicta SINV21711 I 0.661
MDOA004732 Musca domestica MDOA004732 I 0.661
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.661
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.661
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.661
AALB008012 Anopheles albimanus AALB008012 I 0.661
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.661
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.661
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.661
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.661
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.661
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.661
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.661
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.661
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.661
GCM1 Homo sapiens ENSG00000137270 D 0.661
GCM1 Felis catus ENSFCAG00000009490 I 0.661
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.661
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.661
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.661
GCM1 Canis familiaris ENSCAFG00000002273 I 0.661
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.661
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.661
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.661
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.661
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.661
GH10675 Drosophila grimshawi FBgn0118156 I 0.661
ISCW022914 Ixodes scapularis ISCW022914 I 0.661
GK23867 Drosophila willistoni FBgn0225829 I 0.661
GF21907 Drosophila ananassae FBgn0098907 I 0.653
GJ17916 Drosophila virilis FBgn0205084 I 0.653
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.653
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.653
GI17574 Drosophila mojavensis FBgn0140318 I 0.653
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.653
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.653
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.644
ASIS021139 Anopheles sinensis ASIS021139 I 0.644
L798_07938 Zootermopsis nevadensis L798_07938 I 0.644
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.644
GK23810 Drosophila willistoni FBgn0225772 I 0.644
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.644
AAEL000631 Aedes aegypti AAEL000631 I 0.644
GH11056 Drosophila grimshawi FBgn0118537 I 0.644
NV17454 Nasonia vitripennis NV17454 I 0.644
PHUM436840 Pediculus humanus PHUM436840 I 0.644
gcm Drosophila melanogaster FBgn0014179 D 0.644
GM12386 Drosophila sechellia FBgn0167323 I 0.644
GE10457 Drosophila yakuba FBgn0228318 I 0.636
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.627
AMEM008520 Anopheles merus AMEM008520 I 0.619
AGAP007782 Anopheles gambiae AGAP007782 I 0.619
AMIN006367 Anopheles minimus AMIN006367 I 0.619
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.619
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.619
ACOM031032 Anopheles coluzzii ACOM031032 I 0.619
ACHR004082 Anopheles christyi ACHR004082 I 0.619
GD22349 Drosophila simulans FBgn0193756 I 0.619
AARA011979 Anopheles arabiensis AARA011979 I 0.619
AFUN009836 Anopheles funestus AFUN009836 I 0.619
ACUA018162 Anopheles culicifacies ACUA018162 I 0.619
AFAF000663 Anopheles farauti AFAF000663 I 0.619
ADIR000710 Anopheles dirus ADIR000710 I 0.619
AEPI007161 Anopheles epiroticus AEPI007161 I 0.619
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.616
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.610
LotgiG112320 Lottia gigantea LotgiG112320 I 0.610
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.609