ENSLACG00000003372 (Latimeria chalumnae)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSLACG00000003372 T198004_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.797 0.797
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.783 0.783
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.775 0.775
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.775 0.775
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.775 0.775
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.775 0.775
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.775 0.775
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.775 0.775
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.775 0.775
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.775 0.775
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.775 0.775
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.775 0.775
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.739 0.739
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.710 0.710
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.710 0.710
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.703 0.703
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.703 0.703
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.703 0.703
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.703 0.703
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.703 0.703
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.623 0.623
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.623 0.623
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.623 0.623
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.609 0.609
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.609 0.609
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.609 0.609
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000003784 GCM 38 175

Links

Other GCM family TFs
Other Latimeria chalumnae TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000623 Aedes aegypti AAEL000623 I 0.630
AALB008013 Anopheles albimanus AALB008013 I 0.609
Aan_R001196 Calypte anna Aan_R001196 I 0.797
Aan_R001550 Calypte anna Aan_R001550 I 0.710
AARA011980 Anopheles arabiensis AARA011980 I 0.623
AATE008476 Anopheles atroparvus AATE008476 I 0.616
ACHR001414 Anopheles christyi ACHR001414 I 0.630
ACUA009622 Anopheles culicifacies ACUA009622 I 0.630
ADIR000711 Anopheles dirus ADIR000711 I 0.623
AEPI007160 Anopheles epiroticus AEPI007160 I 0.630
AFAF005680 Anopheles farauti AFAF005680 I 0.623
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.790
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.710
AFUN009837 Anopheles funestus AFUN009837 I 0.630
AGAP007783 Anopheles gambiae AGAP007783 I 0.630
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.688
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.725
AMAM003661 Anopheles maculatus AMAM003661 I 0.630
AMIN006368 Anopheles minimus AMIN006368 I 0.630
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.630
ASIS002985 Anopheles sinensis ASIS002985 I 0.616
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.630
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.616
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.790
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.710
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.609
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.652
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.703
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.681
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.725
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.674
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.768
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.725
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.717
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.797
GCM1 Bos taurus ENSBTAG00000008148 I 0.754
GCM2 Bos taurus ENSBTAG00000018787 I 0.703
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.754
GCM1 Canis familiaris ENSCAFG00000002273 I 0.775
GCM2 Canis familiaris ENSCAFG00000009747 I 0.688
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.681
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.775
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.696
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.775
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.688
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.696
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.775
gcm2 Danio rerio ENSDARG00000045413 I 0.725
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.674
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.739
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.754
GCM1 Equus caballus ENSECAG00000014228 I 0.783
GCM2 Equus caballus ENSECAG00000017632 I 0.688
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.717
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.797
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.710
GCM2 Felis catus ENSFCAG00000001608 I 0.681
GCM1 Felis catus ENSFCAG00000009490 I 0.775
GCM2 Homo sapiens ENSG00000124827 D 0.703
GCM1 Homo sapiens ENSG00000137270 D 0.775
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.725
GCM2 Gallus gallus ENSGALG00000012768 I 0.717
GCM1 Gallus gallus ENSGALG00000016316 I 0.797
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.775
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.703
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.710
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.717
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.688
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.775
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.725
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.768
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.783
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.710
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.797
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.754
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.703
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.761
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.688
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.696
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.775
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.696
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.790
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.681
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.775
Gcm2 Mus musculus ENSMUSG00000021362 I 0.688
Gcm1 Mus musculus ENSMUSG00000023333 D 0.783
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.696
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.775
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.703
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.754
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.696
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.757
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.681
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.754
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.688
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.732
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.630
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.667
gcm2 Oryzias latipes ENSORLG00000019715 I 0.717
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.775
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.696
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.703
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.703
GCM2 Procavia capensis ENSPCAG00000011887 I 0.674
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.732
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.732
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.703
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.775
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.717
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.812
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.688
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.775
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.667
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.761
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.775
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.688
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.710
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.783
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.754
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.674
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.674
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.761
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.688
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.710
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.797
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.703
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.616
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.710
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.797
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.703
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.703
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.754
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.688
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.739
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.725
gcm Drosophila melanogaster FBgn0014179 D 0.609
gcm2 Drosophila melanogaster FBgn0019809 D 0.623
GF21907 Drosophila ananassae FBgn0098907 I 0.609
GF22779 Drosophila ananassae FBgn0099773 I 0.623
GG10041 Drosophila erecta FBgn0102353 I 0.623
GG24019 Drosophila erecta FBgn0116158 I 0.609
GH10675 Drosophila grimshawi FBgn0118156 I 0.616
GM12386 Drosophila sechellia FBgn0167323 I 0.609
GM17569 Drosophila sechellia FBgn0172477 I 0.623
GJ18313 Drosophila virilis FBgn0205472 I 0.609
GK23867 Drosophila willistoni FBgn0225829 I 0.609
GE10457 Drosophila yakuba FBgn0228318 I 0.609
GE18856 Drosophila yakuba FBgn0236239 I 0.616
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.645
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.710
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.783
HMEL005671 Heliconius melpomene HMEL005671 I 0.623
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.609
LotgiG112320 Lottia gigantea LotgiG112320 I 0.609
MCINX011946 Melitaea cinxia MCINX011946 I 0.623
MDOA003644 Musca domestica MDOA003644 I 0.616
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.761
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.645
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.652
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.609
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.826
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.746
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.652
Tal_R009935 Tyto alba Tal_R009935 I 0.790
TC014730 Tribolium castaneum TC014730 I 0.609
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.616
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.710
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.790
gcm2.S Xenopus laevis XB-GENE-866131 I 0.703
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.739
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.623