ENSLACG00000009363 (Latimeria chalumnae)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSLACG00000009363 T198005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.884 0.884
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.870 0.870
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.862 0.862
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.841 0.841
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.841 0.841
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.841 0.841
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.841 0.841
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.732 0.732
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.732 0.732
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.725 0.725
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.725 0.725
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.717 0.717
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.717 0.717
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.717 0.717
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.717 0.717
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.717 0.717
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.717 0.717
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.717 0.717
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.717 0.717
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.717 0.717
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.667 0.667
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.667 0.667
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.667 0.667
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.652 0.652
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.652 0.652
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.652 0.652
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000010627 GCM 38 175

Links

Other GCM family TFs
Other Latimeria chalumnae TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gcm2 Danio rerio ENSDARG00000045413 I 0.920
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.913
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.906
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.906
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.906
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.899
gcm2.S Xenopus laevis XB-GENE-866131 I 0.899
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.891
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.884
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.884
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.884
Aan_R001550 Calypte anna Aan_R001550 I 0.877
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.877
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.877
gcm2 Oryzias latipes ENSORLG00000019715 I 0.877
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.870
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.870
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.870
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.870
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.870
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.870
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.870
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.870
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.870
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.862
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.862
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.862
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.862
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.855
GCM2 Gallus gallus ENSGALG00000012768 I 0.848
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.848
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.848
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.848
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.841
GCM2 Homo sapiens ENSG00000124827 D 0.841
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.841
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.841
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.841
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.841
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.841
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.841
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.833
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.833
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.833
Gcm2 Mus musculus ENSMUSG00000021362 I 0.833
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.833
GCM2 Felis catus ENSFCAG00000001608 I 0.833
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.833
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.833
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.833
GCM2 Canis familiaris ENSCAFG00000009747 I 0.833
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.833
GCM2 Bos taurus ENSBTAG00000018787 I 0.833
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.826
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.826
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.826
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.826
GCM2 Equus caballus ENSECAG00000017632 I 0.826
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.826
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.819
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.819
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.819
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.812
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.812
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.790
GCM2 Procavia capensis ENSPCAG00000011887 I 0.790
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.790
GCM2 Echinops telfairi ENSETEG00000012473 I 0.788
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.768
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.754
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.739
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.732
GCM1 Equus caballus ENSECAG00000014228 I 0.732
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.732
Tal_R009935 Tyto alba Tal_R009935 I 0.732
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.732
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.732
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.732
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.732
Gcm1 Mus musculus ENSMUSG00000023333 D 0.732
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.732
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.729
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.725
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.725
GCM1 Gallus gallus ENSGALG00000016316 I 0.725
Aan_R001196 Calypte anna Aan_R001196 I 0.725
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.725
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.725
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.725
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.725
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.725
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.725
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.719
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.717
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.717
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.717
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.717
GCM1 Canis familiaris ENSCAFG00000002273 I 0.717
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.717
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.717
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.717
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.717
GCM1 Felis catus ENSFCAG00000009490 I 0.717
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.717
GCM1 Homo sapiens ENSG00000137270 D 0.717
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.717
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.717
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.717
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.717
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.717
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.717
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.710
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.710
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.703
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.703
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.703
GCM1 Bos taurus ENSBTAG00000008148 I 0.703
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.703
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.703
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.703
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.703
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.703
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.688
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.681
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.681
HMEL005671 Heliconius melpomene HMEL005671 I 0.674
MCINX011946 Melitaea cinxia MCINX011946 I 0.674
AMEM005966 Anopheles merus AMEM005966 I 0.667
AMIN006368 Anopheles minimus AMIN006368 I 0.667
GG10041 Drosophila erecta FBgn0102353 I 0.667
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
AGAP007783 Anopheles gambiae AGAP007783 I 0.667
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.667
AALB008013 Anopheles albimanus AALB008013 I 0.667
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.667
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.667
AAEL000623 Aedes aegypti AAEL000623 I 0.667
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.667
ACOM031025 Anopheles coluzzii ACOM031025 I 0.667
GF22779 Drosophila ananassae FBgn0099773 I 0.667
KGM_05743 Danaus plexippus KGM_05743 I 0.664
AEPI007160 Anopheles epiroticus AEPI007160 I 0.664
ACHR001414 Anopheles christyi ACHR001414 I 0.664
ADIR000711 Anopheles dirus ADIR000711 I 0.659
AARA011980 Anopheles arabiensis AARA011980 I 0.659
LCUP008083 Lucilia cuprina LCUP008083 I 0.659
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.659
MDOA003644 Musca domestica MDOA003644 I 0.659
AFUN009837 Anopheles funestus AFUN009837 I 0.659
GF21907 Drosophila ananassae FBgn0098907 I 0.659
AMAM003661 Anopheles maculatus AMAM003661 I 0.659
Tal_R009965 Tyto alba Tal_R009965 I 0.659
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.657
ACUA009622 Anopheles culicifacies ACUA009622 I 0.657
TC014730 Tribolium castaneum TC014730 I 0.657
GJ18313 Drosophila virilis FBgn0205472 I 0.652
GM12386 Drosophila sechellia FBgn0167323 I 0.652
AFAF005680 Anopheles farauti AFAF005680 I 0.652
gcm Drosophila melanogaster FBgn0014179 D 0.652
GE10457 Drosophila yakuba FBgn0228318 I 0.652
GI17574 Drosophila mojavensis FBgn0140318 I 0.652
CLEC013329 Cimex lectularius CLEC013329 I 0.650
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.650
ADAC002327 Anopheles darlingi ADAC002327 I 0.650
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.650
GE18856 Drosophila yakuba FBgn0236239 I 0.650
GM17569 Drosophila sechellia FBgn0172477 I 0.650
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.645
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.645
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.645
GH10675 Drosophila grimshawi FBgn0118156 I 0.645
ASIS002985 Anopheles sinensis ASIS002985 I 0.645
GL18919 Drosophila persimilis FBgn0156520 I 0.645
GJ17916 Drosophila virilis FBgn0205084 I 0.645
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.645
MDOA004732 Musca domestica MDOA004732 I 0.645
L798_07938 Zootermopsis nevadensis L798_07938 I 0.645
GG24019 Drosophila erecta FBgn0116158 I 0.643
GI11073 Drosophila mojavensis FBgn0133835 I 0.643
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.643
RPRC001299 Rhodnius prolixus RPRC001299 I 0.643
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.643
GK23867 Drosophila willistoni FBgn0225829 I 0.638
PHUM436840 Pediculus humanus PHUM436840 I 0.638
SINV21711 Solenopsis invicta SINV21711 I 0.638
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.638
GB45031 Apis mellifera GB45031 I 0.636
ACEP23384 Atta cephalotes ACEP23384 I 0.636
GL19218 Drosophila persimilis FBgn0156817 I 0.636
AATE008476 Anopheles atroparvus AATE008476 I 0.636
AMEC020313 Anopheles melas AMEC020313 I 0.636
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.636
AMAM005757 Anopheles maculatus AMAM005757 I 0.633
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.630
GK23810 Drosophila willistoni FBgn0225772 I 0.630
ASIS021139 Anopheles sinensis ASIS021139 I 0.630
NV17454 Nasonia vitripennis NV17454 I 0.630
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.630
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.629
GH11056 Drosophila grimshawi FBgn0118537 I 0.629
AALB008012 Anopheles albimanus AALB008012 I 0.623
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.623
ISCW022914 Ixodes scapularis ISCW022914 I 0.623
GD22349 Drosophila simulans FBgn0193756 I 0.623
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.616
AATE020589 Anopheles atroparvus AATE020589 I 0.614
AAEL000631 Aedes aegypti AAEL000631 I 0.614
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.609
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.609
AGAP007782 Anopheles gambiae AGAP007782 I 0.609
AFAF000663 Anopheles farauti AFAF000663 I 0.609
ACOM031032 Anopheles coluzzii ACOM031032 I 0.609
AARA011979 Anopheles arabiensis AARA011979 I 0.609
LotgiG112320 Lottia gigantea LotgiG112320 I 0.609
AEPI007161 Anopheles epiroticus AEPI007161 I 0.609
AMEM008520 Anopheles merus AMEM008520 I 0.609
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.609