GCM2 (Loxodonta africana)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSLAFG00000007475 T198006_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.928 0.928
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.928 0.928
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.928 0.928
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.928 0.928
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.841 0.841
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.819 0.819
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.819 0.819
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.681 0.681
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.681 0.681
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.674 0.674
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.674 0.674
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.667 0.667
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.667 0.667
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.667 0.667
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.667 0.667
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.667 0.667
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.667 0.667
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.667 0.667
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.667 0.667
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.667 0.667
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.667 0.667
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.667 0.667
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.667 0.667
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.652 0.652
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.652 0.652
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.652 0.652
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000006284 GCM 35 172

Links

Other GCM family TFs
Other Loxodonta africana TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.957
GCM2 Canis familiaris ENSCAFG00000009747 I 0.957
GCM2 Echinops telfairi ENSETEG00000012473 I 0.949
GCM2 Felis catus ENSFCAG00000001608 I 0.949
GCM2 Equus caballus ENSECAG00000017632 I 0.949
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.949
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.949
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.942
GCM2 Procavia capensis ENSPCAG00000011887 I 0.942
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.935
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.935
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.928
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.928
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.928
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.928
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.928
GCM2 Homo sapiens ENSG00000124827 D 0.928
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.928
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.928
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.920
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.920
GCM2 Bos taurus ENSBTAG00000018787 I 0.920
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.919
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.913
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.913
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.913
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.913
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.913
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.913
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.906
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.899
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.899
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.899
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.899
Gcm2 Mus musculus ENSMUSG00000021362 I 0.899
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.899
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.891
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.891
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.888
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.870
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.855
Aan_R001550 Calypte anna Aan_R001550 I 0.848
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.845
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.841
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.841
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.841
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.841
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.833
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.833
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.833
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.826
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.826
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.826
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.826
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.826
GCM2 Gallus gallus ENSGALG00000012768 I 0.826
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.819
gcm2 Danio rerio ENSDARG00000045413 I 0.819
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.819
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.819
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.819
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.819
gcm2.S Xenopus laevis XB-GENE-866131 I 0.819
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.812
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.812
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.812
gcm2 Oryzias latipes ENSORLG00000019715 I 0.812
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.812
ENSPMAG00000001027 Petromyzon marinus ENSPMAG00000001027 I 0.772
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.758
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.746
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.717
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.712
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.703
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.695
SMAR010130 Strigamia maritima SMAR010130 I 0.695
TC014730 Tribolium castaneum TC014730 I 0.693
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.692
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.688
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.688
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.686
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.686
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.681
Gcm1 Mus musculus ENSMUSG00000023333 D 0.681
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.681
Tal_R009935 Tyto alba Tal_R009935 I 0.681
AEPI007160 Anopheles epiroticus AEPI007160 I 0.679
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.679
ACHR001414 Anopheles christyi ACHR001414 I 0.679
HMEL005671 Heliconius melpomene HMEL005671 I 0.679
MCINX011946 Melitaea cinxia MCINX011946 I 0.679
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.679
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.679
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.679
KGM_05743 Danaus plexippus KGM_05743 I 0.679
AGAP007783 Anopheles gambiae AGAP007783 I 0.679
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.679
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.674
Aan_R001196 Calypte anna Aan_R001196 I 0.674
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.674
AFAF005680 Anopheles farauti AFAF005680 I 0.674
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.674
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.674
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.674
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.674
GCM1 Gallus gallus ENSGALG00000016316 I 0.674
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.674
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.674
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.674
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.674
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.671
ACUA009622 Anopheles culicifacies ACUA009622 I 0.671
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.671
AAEL000623 Aedes aegypti AAEL000623 I 0.671
AMIN006368 Anopheles minimus AMIN006368 I 0.671
ADIR000711 Anopheles dirus ADIR000711 I 0.671
AALB008013 Anopheles albimanus AALB008013 I 0.671
AARA011980 Anopheles arabiensis AARA011980 I 0.671
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.671
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.671
AMAM003661 Anopheles maculatus AMAM003661 I 0.671
AFUN009837 Anopheles funestus AFUN009837 I 0.671
GCM2 Erinaceus europaeus ENSEEUG00000005577 I 0.670
AMEM005966 Anopheles merus AMEM005966 I 0.667
ACOM031025 Anopheles coluzzii ACOM031025 I 0.667
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.667
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.667
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.667
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.667
GCM1 Bos taurus ENSBTAG00000008148 I 0.667
GCM1 Homo sapiens ENSG00000137270 D 0.667
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.667
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.667
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.667
GCM1 Equus caballus ENSECAG00000014228 I 0.667
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.667
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.667
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.667
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.667
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.667
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.667
SINV21711 Solenopsis invicta SINV21711 I 0.664
GB45031 Apis mellifera GB45031 I 0.664
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.664
GI17574 Drosophila mojavensis FBgn0140318 I 0.664
ACEP23384 Atta cephalotes ACEP23384 I 0.664
ADAC002327 Anopheles darlingi ADAC002327 I 0.664
MDOA004732 Musca domestica MDOA004732 I 0.664
ASIS002985 Anopheles sinensis ASIS002985 I 0.664
AATE008476 Anopheles atroparvus AATE008476 I 0.664
GJ17916 Drosophila virilis FBgn0205084 I 0.664
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.664
AMAM005757 Anopheles maculatus AMAM005757 I 0.661
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.661
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.659
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.659
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.659
GCM1 Canis familiaris ENSCAFG00000002273 I 0.659
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.659
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.659
GCM1 Felis catus ENSFCAG00000009490 I 0.659
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.659
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.659
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.659
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.659
GG10041 Drosophila erecta FBgn0102353 I 0.657
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.657
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.657
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.657
GF22779 Drosophila ananassae FBgn0099773 I 0.657
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.657
gcm2 Drosophila melanogaster FBgn0019809 D 0.657
AMEC020313 Anopheles melas AMEC020313 I 0.657
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.657
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.657
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.657
GCM1 Choloepus hoffmanni ENSCHOG00000003116 I 0.650
GJ18313 Drosophila virilis FBgn0205472 I 0.650
GE18856 Drosophila yakuba FBgn0236239 I 0.650
GH11056 Drosophila grimshawi FBgn0118537 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
GL18919 Drosophila persimilis FBgn0156520 I 0.650
MDOA003644 Musca domestica MDOA003644 I 0.650
GM17569 Drosophila sechellia FBgn0172477 I 0.650
LCUP008083 Lucilia cuprina LCUP008083 I 0.650
L798_07938 Zootermopsis nevadensis L798_07938 I 0.650
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.650
GF21907 Drosophila ananassae FBgn0098907 I 0.650
RPRC001299 Rhodnius prolixus RPRC001299 I 0.650
GCM1 Tupaia belangeri ENSTBEG00000007899 I 0.650
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.649
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.647
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.645
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.643
GL19218 Drosophila persimilis FBgn0156817 I 0.643
gcm Drosophila melanogaster FBgn0014179 D 0.643
PHUM436840 Pediculus humanus PHUM436840 I 0.643
NV17454 Nasonia vitripennis NV17454 I 0.643
GM12386 Drosophila sechellia FBgn0167323 I 0.643
ISCW022914 Ixodes scapularis ISCW022914 I 0.643
CLEC013329 Cimex lectularius CLEC013329 I 0.643
Tal_R009965 Tyto alba Tal_R009965 I 0.642
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.642
HelroG145480 Helobdella robusta HelroG145480 I 0.638
GG24019 Drosophila erecta FBgn0116158 I 0.636
GH10675 Drosophila grimshawi FBgn0118156 I 0.636
AALB008012 Anopheles albimanus AALB008012 I 0.636
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.636
GK23810 Drosophila willistoni FBgn0225772 I 0.636
GK23867 Drosophila willistoni FBgn0225829 I 0.636
GE10457 Drosophila yakuba FBgn0228318 I 0.636
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.623
GD22349 Drosophila simulans FBgn0193756 I 0.621
AAEL000631 Aedes aegypti AAEL000631 I 0.621
ASIS021139 Anopheles sinensis ASIS021139 I 0.621
CapteG133139 Capitella teleta CapteG133139 I 0.618
TRE_0001360101 Trichobilharzia regenti TRE_0001360101 I 0.615
AMIN006367 Anopheles minimus AMIN006367 I 0.614
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.614
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.614
AARA011979 Anopheles arabiensis AARA011979 I 0.614
ACOM031032 Anopheles coluzzii ACOM031032 I 0.614
ACUA018162 Anopheles culicifacies ACUA018162 I 0.614
ACHR004082 Anopheles christyi ACHR004082 I 0.614
AATE020589 Anopheles atroparvus AATE020589 I 0.614
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.614
ADIR000710 Anopheles dirus ADIR000710 I 0.614
AEPI007161 Anopheles epiroticus AEPI007161 I 0.614
AGAP007782 Anopheles gambiae AGAP007782 I 0.614
AFUN009836 Anopheles funestus AFUN009836 I 0.614
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.614
AFAF000663 Anopheles farauti AFAF000663 I 0.614
AMEM008520 Anopheles merus AMEM008520 I 0.614