GCM2 (Pan troglodytes)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSPTRG00000017724 T198049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.986 0.986
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.986 0.986
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.986 0.986
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.986 0.986
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.877 0.877
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.826 0.826
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.819 0.819
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.710 0.710
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.710 0.710
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.703 0.703
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.696 0.696
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.696 0.696
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.696 0.696
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.696 0.696
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.696 0.696
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.696 0.696
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.696 0.696
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.696 0.696
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.696 0.696
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.688 0.688
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.688 0.688
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.688 0.688
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.688 0.688
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.667 0.667
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.667 0.667
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.667 0.667
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.667 0.667
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000030262 GCM 35 172

Links

Other GCM family TFs
Other Pan troglodytes TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.986
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.986
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.986
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.986
GCM2 Homo sapiens ENSG00000124827 D 0.986
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.978
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.978
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.978
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.971
GCM2 Bos taurus ENSBTAG00000018787 I 0.957
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.957
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.957
GCM2 Felis catus ENSFCAG00000001608 I 0.957
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.949
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.949
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.949
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.949
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.949
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.949
GCM2 Canis familiaris ENSCAFG00000009747 I 0.942
GCM2 Equus caballus ENSECAG00000017632 I 0.942
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.935
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.935
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.935
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.935
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.935
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.928
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.928
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.928
Gcm2 Mus musculus ENSMUSG00000021362 I 0.928
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.928
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.920
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.913
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.899
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.899
GCM2 Echinops telfairi ENSETEG00000012473 I 0.898
Aan_R001550 Calypte anna Aan_R001550 I 0.884
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.884
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.877
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.877
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.877
GCM2 Procavia capensis ENSPCAG00000011887 I 0.877
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.877
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.870
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.870
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.870
GCM2 Gallus gallus ENSGALG00000012768 I 0.862
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.862
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.855
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.855
gcm2 Danio rerio ENSDARG00000045413 I 0.848
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.841
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.841
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.841
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.833
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.826
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.826
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.826
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.826
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.826
gcm2 Oryzias latipes ENSORLG00000019715 I 0.819
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.819
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.819
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.819
gcm2.S Xenopus laevis XB-GENE-866131 I 0.819
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.819
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.797
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.739
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.717
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.710
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.710
Gcm1 Mus musculus ENSMUSG00000023333 D 0.710
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.710
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.710
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.710
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.710
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.703
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.703
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.703
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.703
AAEL000623 Aedes aegypti AAEL000623 I 0.703
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.703
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.703
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.696
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.696
AALB008013 Anopheles albimanus AALB008013 I 0.696
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.696
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.696
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.696
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.696
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.696
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.696
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.696
GCM1 Bos taurus ENSBTAG00000008148 I 0.696
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.696
GCM1 Equus caballus ENSECAG00000014228 I 0.696
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.696
GCM1 Homo sapiens ENSG00000137270 D 0.696
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.696
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.696
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.696
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.696
TC014730 Tribolium castaneum TC014730 I 0.693
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.688
GCM1 Canis familiaris ENSCAFG00000002273 I 0.688
GG10041 Drosophila erecta FBgn0102353 I 0.688
HMEL005671 Heliconius melpomene HMEL005671 I 0.688
MCINX011946 Melitaea cinxia MCINX011946 I 0.688
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.688
SINV21711 Solenopsis invicta SINV21711 I 0.688
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.688
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.688
Tal_R009935 Tyto alba Tal_R009935 I 0.688
ADIR000711 Anopheles dirus ADIR000711 I 0.688
AFUN009837 Anopheles funestus AFUN009837 I 0.688
AGAP007783 Anopheles gambiae AGAP007783 I 0.688
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.688
AMIN006368 Anopheles minimus AMIN006368 I 0.688
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.688
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.688
GF22779 Drosophila ananassae FBgn0099773 I 0.688
AMAM003661 Anopheles maculatus AMAM003661 I 0.688
Aan_R001196 Calypte anna Aan_R001196 I 0.688
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.688
GCM1 Gallus gallus ENSGALG00000016316 I 0.688
gcm2 Drosophila melanogaster FBgn0019809 D 0.688
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.688
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.688
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.688
GCM1 Felis catus ENSFCAG00000009490 I 0.688
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.688
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.688
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.688
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.688
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.688
ACHR001414 Anopheles christyi ACHR001414 I 0.686
AEPI007160 Anopheles epiroticus AEPI007160 I 0.686
MDOA004732 Musca domestica MDOA004732 I 0.681
PHUM436840 Pediculus humanus PHUM436840 I 0.681
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.681
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.681
AFAF005680 Anopheles farauti AFAF005680 I 0.681
AARA011980 Anopheles arabiensis AARA011980 I 0.681
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.681
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.681
GL18919 Drosophila persimilis FBgn0156520 I 0.681
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.679
ADAC002327 Anopheles darlingi ADAC002327 I 0.679
KGM_05743 Danaus plexippus KGM_05743 I 0.679
ACUA009622 Anopheles culicifacies ACUA009622 I 0.679
GE18856 Drosophila yakuba FBgn0236239 I 0.679
AMAM005757 Anopheles maculatus AMAM005757 I 0.679
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.675
Tal_R009965 Tyto alba Tal_R009965 I 0.675
GJ18313 Drosophila virilis FBgn0205472 I 0.674
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.674
MDOA003644 Musca domestica MDOA003644 I 0.674
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.674
GF21907 Drosophila ananassae FBgn0098907 I 0.674
LCUP008083 Lucilia cuprina LCUP008083 I 0.674
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.674
GB45031 Apis mellifera GB45031 I 0.671
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.671
ACEP23384 Atta cephalotes ACEP23384 I 0.671
AATE008476 Anopheles atroparvus AATE008476 I 0.671
ASIS002985 Anopheles sinensis ASIS002985 I 0.671
GI11073 Drosophila mojavensis FBgn0133835 I 0.671
GM17569 Drosophila sechellia FBgn0172477 I 0.671
GM12386 Drosophila sechellia FBgn0167323 I 0.667
gcm Drosophila melanogaster FBgn0014179 D 0.667
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.667
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.667
ACOM031025 Anopheles coluzzii ACOM031025 I 0.667
AMEM005966 Anopheles merus AMEM005966 I 0.667
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.667
L798_07938 Zootermopsis nevadensis L798_07938 I 0.667
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.664
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.664
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.664
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.664
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.664
AALB008012 Anopheles albimanus AALB008012 I 0.659
GJ17916 Drosophila virilis FBgn0205084 I 0.659
GI17574 Drosophila mojavensis FBgn0140318 I 0.659
ISCW022914 Ixodes scapularis ISCW022914 I 0.659
GH10675 Drosophila grimshawi FBgn0118156 I 0.657
AMEC020313 Anopheles melas AMEC020313 I 0.657
CLEC013329 Cimex lectularius CLEC013329 I 0.657
RPRC001299 Rhodnius prolixus RPRC001299 I 0.657
GK23867 Drosophila willistoni FBgn0225829 I 0.652
NV17454 Nasonia vitripennis NV17454 I 0.652
GK23810 Drosophila willistoni FBgn0225772 I 0.652
GH11056 Drosophila grimshawi FBgn0118537 I 0.650
GL19218 Drosophila persimilis FBgn0156817 I 0.650
GG24019 Drosophila erecta FBgn0116158 I 0.650
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.650
GE10457 Drosophila yakuba FBgn0228318 I 0.650
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.645
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.643
AEPI007161 Anopheles epiroticus AEPI007161 I 0.638
AFAF000663 Anopheles farauti AFAF000663 I 0.638
AGAP007782 Anopheles gambiae AGAP007782 I 0.638
AMEM008520 Anopheles merus AMEM008520 I 0.638
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.638
LotgiG112320 Lottia gigantea LotgiG112320 I 0.638
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.638
AARA011979 Anopheles arabiensis AARA011979 I 0.638
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.638
ACOM031032 Anopheles coluzzii ACOM031032 I 0.638
GD22349 Drosophila simulans FBgn0193756 I 0.636
AMIN006367 Anopheles minimus AMIN006367 I 0.629
ASIS021139 Anopheles sinensis ASIS021139 I 0.629
ACHR004082 Anopheles christyi ACHR004082 I 0.629
AAEL000631 Aedes aegypti AAEL000631 I 0.629
AFUN009836 Anopheles funestus AFUN009836 I 0.629
AATE020589 Anopheles atroparvus AATE020589 I 0.629
ACUA018162 Anopheles culicifacies ACUA018162 I 0.629
ADIR000710 Anopheles dirus ADIR000710 I 0.629
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.621
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.621
HelroG145480 Helobdella robusta HelroG145480 I 0.621
CapteG133139 Capitella teleta CapteG133139 I 0.616
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.616
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.609