Gcm2 (Rattus norvegicus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSRNOG00000015008 T198054_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.935 0.935
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.935 0.935
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.935 0.935
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.935 0.935
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.862 0.862
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.819 0.819
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.812 0.812
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.696 0.696
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.696 0.696
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.696 0.696
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.688 0.688
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.688 0.688
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.688 0.688
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.688 0.688
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.688 0.688
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.688 0.688
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.688 0.688
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.688 0.688
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.688 0.688
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.688 0.688
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.667 0.667
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.667 0.667
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.667 0.667
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.652 0.652
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.652 0.652
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.652 0.652
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000020244 GCM 35 172

Links

Other GCM family TFs
Other Rattus norvegicus TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gcm2 Mus musculus ENSMUSG00000021362 I 0.993
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.957
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.949
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.949
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.949
GCM2 Felis catus ENSFCAG00000001608 I 0.949
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.942
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.942
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.942
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.942
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.942
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.935
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.935
GCM2 Canis familiaris ENSCAFG00000009747 I 0.935
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.935
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.935
GCM2 Homo sapiens ENSG00000124827 D 0.935
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.935
GCM2 Equus caballus ENSECAG00000017632 I 0.935
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.935
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.935
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.928
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.928
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.928
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.928
GCM2 Bos taurus ENSBTAG00000018787 I 0.928
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.920
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.920
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.920
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.913
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.913
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.906
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.899
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.899
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.884
GCM2 Echinops telfairi ENSETEG00000012473 I 0.881
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.877
Aan_R001550 Calypte anna Aan_R001550 I 0.870
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.870
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.862
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.862
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.862
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.862
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.855
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.855
GCM2 Procavia capensis ENSPCAG00000011887 I 0.855
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.848
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.848
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.848
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.841
gcm2 Danio rerio ENSDARG00000045413 I 0.841
GCM2 Gallus gallus ENSGALG00000012768 I 0.841
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.833
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.833
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.833
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.833
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.826
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.826
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.826
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.826
gcm2.S Xenopus laevis XB-GENE-866131 I 0.819
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.819
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.819
gcm2 Oryzias latipes ENSORLG00000019715 I 0.812
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.812
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.812
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.797
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.739
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.735
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.710
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.710
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.710
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.703
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.703
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.701
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.696
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.696
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.696
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.696
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.696
Gcm1 Mus musculus ENSMUSG00000023333 D 0.696
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.688
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.688
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.688
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.688
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.688
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.688
AAEL000623 Aedes aegypti AAEL000623 I 0.688
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.688
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.688
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.688
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.688
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.688
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.688
Aan_R001196 Calypte anna Aan_R001196 I 0.688
Tal_R009935 Tyto alba Tal_R009935 I 0.688
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.688
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.688
GCM1 Gallus gallus ENSGALG00000016316 I 0.688
GCM1 Homo sapiens ENSG00000137270 D 0.688
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.688
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.688
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.688
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.688
GCM1 Equus caballus ENSECAG00000014228 I 0.688
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.688
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.681
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.681
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.681
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.681
MCINX011946 Melitaea cinxia MCINX011946 I 0.681
HMEL005671 Heliconius melpomene HMEL005671 I 0.681
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.681
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.681
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.681
GCM1 Bos taurus ENSBTAG00000008148 I 0.681
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.681
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.681
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.681
GCM1 Canis familiaris ENSCAFG00000002273 I 0.681
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.681
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.681
GCM1 Felis catus ENSFCAG00000009490 I 0.681
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.681
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.675
AALB008013 Anopheles albimanus AALB008013 I 0.674
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.674
AMIN006368 Anopheles minimus AMIN006368 I 0.674
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.674
ADIR000711 Anopheles dirus ADIR000711 I 0.674
AGAP007783 Anopheles gambiae AGAP007783 I 0.674
AFUN009837 Anopheles funestus AFUN009837 I 0.674
AMAM003661 Anopheles maculatus AMAM003661 I 0.674
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.674
ACHR001414 Anopheles christyi ACHR001414 I 0.671
KGM_05743 Danaus plexippus KGM_05743 I 0.671
AEPI007160 Anopheles epiroticus AEPI007160 I 0.671
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.669
AFAF005680 Anopheles farauti AFAF005680 I 0.667
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.667
GG10041 Drosophila erecta FBgn0102353 I 0.667
GF22779 Drosophila ananassae FBgn0099773 I 0.667
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.667
AARA011980 Anopheles arabiensis AARA011980 I 0.667
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.667
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.667
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
ACUA009622 Anopheles culicifacies ACUA009622 I 0.664
TC014730 Tribolium castaneum TC014730 I 0.664
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.664
GJ18313 Drosophila virilis FBgn0205472 I 0.659
Tal_R009965 Tyto alba Tal_R009965 I 0.659
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.659
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.657
ADAC002327 Anopheles darlingi ADAC002327 I 0.657
AATE008476 Anopheles atroparvus AATE008476 I 0.657
ASIS002985 Anopheles sinensis ASIS002985 I 0.657
GE18856 Drosophila yakuba FBgn0236239 I 0.657
GL18919 Drosophila persimilis FBgn0156520 I 0.652
MDOA003644 Musca domestica MDOA003644 I 0.652
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.652
gcm Drosophila melanogaster FBgn0014179 D 0.652
LCUP008083 Lucilia cuprina LCUP008083 I 0.652
GM12386 Drosophila sechellia FBgn0167323 I 0.652
PHUM436840 Pediculus humanus PHUM436840 I 0.652
AMAM005757 Anopheles maculatus AMAM005757 I 0.651
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.650
GM17569 Drosophila sechellia FBgn0172477 I 0.650
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.650
L798_07938 Zootermopsis nevadensis L798_07938 I 0.645
AALB008012 Anopheles albimanus AALB008012 I 0.645
SINV21711 Solenopsis invicta SINV21711 I 0.645
ACOM031025 Anopheles coluzzii ACOM031025 I 0.644
AMEM005966 Anopheles merus AMEM005966 I 0.644
RPRC001299 Rhodnius prolixus RPRC001299 I 0.643
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.643
CLEC013329 Cimex lectularius CLEC013329 I 0.643
MDOA004732 Musca domestica MDOA004732 I 0.643
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.643
GF21907 Drosophila ananassae FBgn0098907 I 0.643
AMEC020313 Anopheles melas AMEC020313 I 0.643
GJ17916 Drosophila virilis FBgn0205084 I 0.638
GK23867 Drosophila willistoni FBgn0225829 I 0.638
GI17574 Drosophila mojavensis FBgn0140318 I 0.638
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.638
ISCW022914 Ixodes scapularis ISCW022914 I 0.638
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.638
GB45031 Apis mellifera GB45031 I 0.636
GE10457 Drosophila yakuba FBgn0228318 I 0.636
GL19218 Drosophila persimilis FBgn0156817 I 0.636
GH10675 Drosophila grimshawi FBgn0118156 I 0.636
ACEP23384 Atta cephalotes ACEP23384 I 0.636
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.636
GG24019 Drosophila erecta FBgn0116158 I 0.636
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
GK23810 Drosophila willistoni FBgn0225772 I 0.630
GH11056 Drosophila grimshawi FBgn0118537 I 0.629
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.629
NV17454 Nasonia vitripennis NV17454 I 0.623
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.623
ASIS021139 Anopheles sinensis ASIS021139 I 0.621
GD22349 Drosophila simulans FBgn0193756 I 0.621
HelroG145480 Helobdella robusta HelroG145480 I 0.621
AEPI007161 Anopheles epiroticus AEPI007161 I 0.616
ACOM031032 Anopheles coluzzii ACOM031032 I 0.616
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.616
AARA011979 Anopheles arabiensis AARA011979 I 0.616
AFAF000663 Anopheles farauti AFAF000663 I 0.616
AGAP007782 Anopheles gambiae AGAP007782 I 0.616
AMEM008520 Anopheles merus AMEM008520 I 0.616
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.616
AATE020589 Anopheles atroparvus AATE020589 I 0.614
AAEL000631 Aedes aegypti AAEL000631 I 0.614
CapteG133139 Capitella teleta CapteG133139 I 0.610
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.609