GCM2 (Taeniopygia guttata)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSTGUG00000005756 T198064_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M02023_2.00		 Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.870 0.870
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.870 0.870
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.870 0.870
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.870 0.870
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.862 0.862
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.855 0.855
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.754 0.754
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.754 0.754
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.746 0.746
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.746 0.746
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.746 0.746
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.746 0.746
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.746 0.746
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.746 0.746
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.746 0.746
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.746 0.746
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.746 0.746
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.746 0.746
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.746 0.746
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.667 0.667
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.667 0.667
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.667 0.667
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.667 0.667
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.659 0.659
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.659 0.659
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.659 0.659
For this family, TFs with SR scores > 0.607 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02023_2.00 GCM 19 156

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000005919 GCM 19 156

Links

Other GCM family TFs
Other Taeniopygia guttata TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.993
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.993
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.986
Aan_R001550 Calypte anna Aan_R001550 I 0.986
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.978
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.978
GCM2 Gallus gallus ENSGALG00000012768 I 0.971
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.964
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.928
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.920
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.913
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.899
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.891
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.891
gcm2 Danio rerio ENSDARG00000045413 I 0.891
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.884
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.884
GCM2 Felis catus ENSFCAG00000001608 I 0.884
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.884
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.884
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.884
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.884
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.884
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.884
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.877
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.877
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.877
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.877
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.877
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.877
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.877
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.877
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.877
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.877
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.877
GCM2 Bos taurus ENSBTAG00000018787 I 0.877
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.870
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.870
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.870
GCM2 Equus caballus ENSECAG00000017632 I 0.870
GCM2 Homo sapiens ENSG00000124827 D 0.870
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.870
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.870
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.870
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.870
GCM2 Canis familiaris ENSCAFG00000009747 I 0.870
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.862
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.862
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.862
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.862
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.862
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.862
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.862
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.862
gcm2 Oryzias latipes ENSORLG00000019715 I 0.855
Gcm2 Mus musculus ENSMUSG00000021362 I 0.855
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.855
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.855
gcm2.S Xenopus laevis XB-GENE-866131 I 0.848
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.848
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.848
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.841
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.833
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.833
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.826
GCM2 Echinops telfairi ENSETEG00000012473 I 0.822
GCM2 Procavia capensis ENSPCAG00000011887 I 0.819
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.795
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.775
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.765
Gcm1 Mus musculus ENSMUSG00000023333 D 0.754
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.754
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.754
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.754
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.754
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.754
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.748
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.746
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.746
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.746
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.746
GCM1 Equus caballus ENSECAG00000014228 I 0.746
GCM1 Homo sapiens ENSG00000137270 D 0.746
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.746
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.746
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.746
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.746
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.746
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.746
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.746
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.746
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.746
Tal_R009965 Tyto alba Tal_R009965 I 0.740
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.739
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.739
GCM1 Canis familiaris ENSCAFG00000002273 I 0.739
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.739
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.739
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.739
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.739
Aan_R001196 Calypte anna Aan_R001196 I 0.739
GCM1 Gallus gallus ENSGALG00000016316 I 0.739
GCM1 Felis catus ENSFCAG00000009490 I 0.739
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.739
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.739
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.739
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.739
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.732
Tal_R009935 Tyto alba Tal_R009935 I 0.732
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.732
GCM1 Bos taurus ENSBTAG00000008148 I 0.732
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.732
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.732
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.732
SMAR010130 Strigamia maritima SMAR010130 I 0.729
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.725
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.725
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.725
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.725
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.725
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.725
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.721
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.719
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.717
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.717
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.717
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.710
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.703
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.681
HMEL005671 Heliconius melpomene HMEL005671 I 0.681
MCINX011946 Melitaea cinxia MCINX011946 I 0.679
KGM_05743 Danaus plexippus KGM_05743 I 0.679
AGAP007783 Anopheles gambiae AGAP007783 I 0.674
AMIN006368 Anopheles minimus AMIN006368 I 0.674
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.674
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.674
AAEL000623 Aedes aegypti AAEL000623 I 0.671
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.671
AEPI007160 Anopheles epiroticus AEPI007160 I 0.671
TC014730 Tribolium castaneum TC014730 I 0.671
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.671
AMAM005757 Anopheles maculatus AMAM005757 I 0.670
GM12386 Drosophila sechellia FBgn0167323 I 0.667
AFAF005680 Anopheles farauti AFAF005680 I 0.667
gcm Drosophila melanogaster FBgn0014179 D 0.667
AALB008013 Anopheles albimanus AALB008013 I 0.667
ACHR001414 Anopheles christyi ACHR001414 I 0.664
ADIR000711 Anopheles dirus ADIR000711 I 0.664
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.664
ACUA009622 Anopheles culicifacies ACUA009622 I 0.664
AFUN009837 Anopheles funestus AFUN009837 I 0.664
CLEC013329 Cimex lectularius CLEC013329 I 0.664
AMAM003661 Anopheles maculatus AMAM003661 I 0.664
GF21907 Drosophila ananassae FBgn0098907 I 0.664
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.662
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.659
GG10041 Drosophila erecta FBgn0102353 I 0.659
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.659
gcm2 Drosophila melanogaster FBgn0019809 D 0.659
GF22779 Drosophila ananassae FBgn0099773 I 0.659
GJ17916 Drosophila virilis FBgn0205084 I 0.659
ISCW022914 Ixodes scapularis ISCW022914 I 0.659
GJ18313 Drosophila virilis FBgn0205472 I 0.659
GI17574 Drosophila mojavensis FBgn0140318 I 0.659
ADAC002327 Anopheles darlingi ADAC002327 I 0.657
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.657
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.657
ACEP23384 Atta cephalotes ACEP23384 I 0.657
SINV21711 Solenopsis invicta SINV21711 I 0.657
AARA011980 Anopheles arabiensis AARA011980 I 0.657
GE10457 Drosophila yakuba FBgn0228318 I 0.657
ASIS002985 Anopheles sinensis ASIS002985 I 0.657
GG24019 Drosophila erecta FBgn0116158 I 0.657
RPRC001299 Rhodnius prolixus RPRC001299 I 0.657
GB45031 Apis mellifera GB45031 I 0.657
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.657
AATE008476 Anopheles atroparvus AATE008476 I 0.657
AMEM005966 Anopheles merus AMEM005966 I 0.655
ACOM031025 Anopheles coluzzii ACOM031025 I 0.655
L798_07938 Zootermopsis nevadensis L798_07938 I 0.652
MDOA004732 Musca domestica MDOA004732 I 0.650
MDOA003644 Musca domestica MDOA003644 I 0.650
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.650
LCUP008083 Lucilia cuprina LCUP008083 I 0.650
AMEC020313 Anopheles melas AMEC020313 I 0.650
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.650
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.650
GM17569 Drosophila sechellia FBgn0172477 I 0.650
GE18856 Drosophila yakuba FBgn0236239 I 0.650
PHUM436840 Pediculus humanus PHUM436840 I 0.650
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.650
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.650
GL19218 Drosophila persimilis FBgn0156817 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
GH11056 Drosophila grimshawi FBgn0118537 I 0.650
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.650
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.650
NV17454 Nasonia vitripennis NV17454 I 0.645
GK23810 Drosophila willistoni FBgn0225772 I 0.645
GK23867 Drosophila willistoni FBgn0225829 I 0.645
AALB008012 Anopheles albimanus AALB008012 I 0.645
GH10675 Drosophila grimshawi FBgn0118156 I 0.643
GL18919 Drosophila persimilis FBgn0156520 I 0.643
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.643
GCM2 Erinaceus europaeus ENSEEUG00000005577 I 0.637
ASIS021139 Anopheles sinensis ASIS021139 I 0.636
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
CapteG133139 Capitella teleta CapteG133139 I 0.632
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.630
AARA011979 Anopheles arabiensis AARA011979 I 0.630
AGAP007782 Anopheles gambiae AGAP007782 I 0.630
AMEM008520 Anopheles merus AMEM008520 I 0.630
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.630
AEPI007161 Anopheles epiroticus AEPI007161 I 0.630
ACOM031032 Anopheles coluzzii ACOM031032 I 0.630
AATE020589 Anopheles atroparvus AATE020589 I 0.629
HelroG145480 Helobdella robusta HelroG145480 I 0.629
GD22349 Drosophila simulans FBgn0193756 I 0.629
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.621
AFAF000663 Anopheles farauti AFAF000663 I 0.621
AAEL000631 Aedes aegypti AAEL000631 I 0.621
AFUN009836 Anopheles funestus AFUN009836 I 0.621
ACUA018162 Anopheles culicifacies ACUA018162 I 0.621
ACHR004082 Anopheles christyi ACHR004082 I 0.621
AMIN006367 Anopheles minimus AMIN006367 I 0.621
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.616
ADIR000710 Anopheles dirus ADIR000710 I 0.614
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.614
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.614