gcm2 (Tetraodon nigroviridis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSTNIG00000005042 T198066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm2
M02024_2.00		 Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.978 0.978
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.855 0.855
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.826 0.826
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.826 0.826
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.826 0.826
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.826 0.826
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.717 0.717
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.717 0.717
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.710 0.710
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.710 0.710
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.710 0.710
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.710 0.710
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.710 0.710
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.710 0.710
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.710 0.710
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.710 0.710
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.710 0.710
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.710 0.710
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.703 0.703
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.645 0.645
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.645 0.645
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.645 0.645
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.645 0.645
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.645 0.645
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.645 0.645
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.645 0.645
For this family, TFs with SR scores > 0.607 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02024_2.00 GCM 37 174

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000007708 GCM 37 174

Links

Other GCM family TFs
Other Tetraodon nigroviridis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.978
gcm2 Oryzias latipes ENSORLG00000019715 I 0.957
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.942
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.942
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.920
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.913
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.906
gcm2 Danio rerio ENSDARG00000045413 I 0.906
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.899
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.891
gcm2.S Xenopus laevis XB-GENE-866131 I 0.884
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.877
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.870
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.870
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.862
Aan_R001550 Calypte anna Aan_R001550 I 0.855
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.855
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.855
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.855
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.855
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.848
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.848
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.848
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.841
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.841
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.841
GCM2 Gallus gallus ENSGALG00000012768 I 0.841
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.841
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.841
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.833
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.833
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.833
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.833
GCM2 Canis familiaris ENSCAFG00000009747 I 0.833
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.833
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.826
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.826
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.826
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.826
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.826
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.826
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.826
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.826
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.826
GCM2 Bos taurus ENSBTAG00000018787 I 0.826
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.826
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.826
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.826
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.826
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.826
GCM2 Felis catus ENSFCAG00000001608 I 0.826
GCM2 Homo sapiens ENSG00000124827 D 0.826
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.826
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.819
GCM2 Equus caballus ENSECAG00000017632 I 0.819
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.819
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.819
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.819
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.819
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.812
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.812
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.812
Gcm2 Mus musculus ENSMUSG00000021362 I 0.812
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.804
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.804
GCM2 Procavia capensis ENSPCAG00000011887 I 0.804
GCM2 Echinops telfairi ENSETEG00000012473 I 0.797
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.797
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.790
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.746
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.746
Tal_R009935 Tyto alba Tal_R009935 I 0.725
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.720
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.717
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.717
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.717
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.717
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.717
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.717
GCM1 Equus caballus ENSECAG00000014228 I 0.717
GCM1 Felis catus ENSFCAG00000009490 I 0.717
GCM1 Canis familiaris ENSCAFG00000002273 I 0.717
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.717
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.717
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.717
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.710
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.710
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.710
Aan_R001196 Calypte anna Aan_R001196 I 0.710
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.710
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.710
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.710
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.710
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.710
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.710
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.710
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.710
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.710
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.710
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.710
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.710
Gcm1 Mus musculus ENSMUSG00000023333 D 0.710
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.710
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.710
GCM1 Gallus gallus ENSGALG00000016316 I 0.710
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.710
GCM1 Homo sapiens ENSG00000137270 D 0.710
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.710
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.710
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.710
GCM1 Bos taurus ENSBTAG00000008148 I 0.703
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.703
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.703
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.703
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.703
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.703
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.703
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.703
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.703
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.703
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.688
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.688
AMAM005757 Anopheles maculatus AMAM005757 I 0.688
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.681
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.681
MCINX011946 Melitaea cinxia MCINX011946 I 0.681
AMIN006368 Anopheles minimus AMIN006368 I 0.681
AMAM003661 Anopheles maculatus AMAM003661 I 0.681
AFUN009837 Anopheles funestus AFUN009837 I 0.681
AEPI007160 Anopheles epiroticus AEPI007160 I 0.679
ACHR001414 Anopheles christyi ACHR001414 I 0.679
AGAP007783 Anopheles gambiae AGAP007783 I 0.674
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.674
L798_07938 Zootermopsis nevadensis L798_07938 I 0.674
HMEL005671 Heliconius melpomene HMEL005671 I 0.674
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.674
ADIR000711 Anopheles dirus ADIR000711 I 0.674
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.674
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.674
TC014730 Tribolium castaneum TC014730 I 0.671
KGM_05743 Danaus plexippus KGM_05743 I 0.671
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.667
AFAF005680 Anopheles farauti AFAF005680 I 0.667
AATE008476 Anopheles atroparvus AATE008476 I 0.667
AAEL000623 Aedes aegypti AAEL000623 I 0.667
AARA011980 Anopheles arabiensis AARA011980 I 0.667
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.667
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.667
ACUA009622 Anopheles culicifacies ACUA009622 I 0.664
GF21907 Drosophila ananassae FBgn0098907 I 0.659
AALB008013 Anopheles albimanus AALB008013 I 0.659
ASIS002985 Anopheles sinensis ASIS002985 I 0.659
RPRC001299 Rhodnius prolixus RPRC001299 I 0.657
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.657
LCUP008083 Lucilia cuprina LCUP008083 I 0.652
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.652
GK23810 Drosophila willistoni FBgn0225772 I 0.652
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.652
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.652
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.652
PHUM436840 Pediculus humanus PHUM436840 I 0.652
MDOA003644 Musca domestica MDOA003644 I 0.652
ASIS021139 Anopheles sinensis ASIS021139 I 0.652
MDOA004732 Musca domestica MDOA004732 I 0.652
AAEL000631 Aedes aegypti AAEL000631 I 0.650
ACEP23384 Atta cephalotes ACEP23384 I 0.650
CLEC013329 Cimex lectularius CLEC013329 I 0.650
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.650
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.650
GB45031 Apis mellifera GB45031 I 0.650
GM12386 Drosophila sechellia FBgn0167323 I 0.645
GL18919 Drosophila persimilis FBgn0156520 I 0.645
AARA011979 Anopheles arabiensis AARA011979 I 0.645
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.645
AMEM008520 Anopheles merus AMEM008520 I 0.645
gcm Drosophila melanogaster FBgn0014179 D 0.645
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.645
gcm2 Drosophila melanogaster FBgn0019809 D 0.645
GF22779 Drosophila ananassae FBgn0099773 I 0.645
GG10041 Drosophila erecta FBgn0102353 I 0.645
AEPI007161 Anopheles epiroticus AEPI007161 I 0.645
AFAF000663 Anopheles farauti AFAF000663 I 0.645
ACOM031032 Anopheles coluzzii ACOM031032 I 0.645
AALB008012 Anopheles albimanus AALB008012 I 0.645
AGAP007782 Anopheles gambiae AGAP007782 I 0.645
ISCW022914 Ixodes scapularis ISCW022914 I 0.645
NV17454 Nasonia vitripennis NV17454 I 0.645
GE10457 Drosophila yakuba FBgn0228318 I 0.645
SINV21711 Solenopsis invicta SINV21711 I 0.645
AFUN009836 Anopheles funestus AFUN009836 I 0.643
AMIN006367 Anopheles minimus AMIN006367 I 0.643
ACUA018162 Anopheles culicifacies ACUA018162 I 0.643
GE18856 Drosophila yakuba FBgn0236239 I 0.643
AMEC020313 Anopheles melas AMEC020313 I 0.643
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.643
ACHR004082 Anopheles christyi ACHR004082 I 0.643
ADAC002327 Anopheles darlingi ADAC002327 I 0.643
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.638
GJ18313 Drosophila virilis FBgn0205472 I 0.638
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.638
GG24019 Drosophila erecta FBgn0116158 I 0.636
GI17574 Drosophila mojavensis FBgn0140318 I 0.630
GK23867 Drosophila willistoni FBgn0225829 I 0.630
GJ17916 Drosophila virilis FBgn0205084 I 0.630
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.630
GH10675 Drosophila grimshawi FBgn0118156 I 0.630
GL19218 Drosophila persimilis FBgn0156817 I 0.629
GI11073 Drosophila mojavensis FBgn0133835 I 0.629
GM17569 Drosophila sechellia FBgn0172477 I 0.629
AATE020589 Anopheles atroparvus AATE020589 I 0.629
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.629
ADIR000710 Anopheles dirus ADIR000710 I 0.629
Tal_R009965 Tyto alba Tal_R009965 I 0.626
GD22349 Drosophila simulans FBgn0193756 I 0.623
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.623
GH11056 Drosophila grimshawi FBgn0118537 I 0.623
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.621
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.621
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.616
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.609