GCM2 (Vicugna pacos)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSVPAG00000003006 T198073_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.928 0.928
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.928 0.928
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.928 0.928
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.928 0.928
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.870 0.870
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.848 0.848
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.841 0.841
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.703 0.703
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.703 0.703
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.696 0.696
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.688 0.688
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.688 0.688
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.688 0.688
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.688 0.688
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.688 0.688
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.688 0.688
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.688 0.688
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.688 0.688
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.688 0.688
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.681 0.681
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.667 0.667
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.667 0.667
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.667 0.667
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.652 0.652
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.652 0.652
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.652 0.652
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000002778 GCM 35 172

Links

Other GCM family TFs
Other Vicugna pacos TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.971
GCM2 Felis catus ENSFCAG00000001608 I 0.964
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.964
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.964
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.957
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.957
GCM2 Bos taurus ENSBTAG00000018787 I 0.949
GCM2 Canis familiaris ENSCAFG00000009747 I 0.949
GCM2 Equus caballus ENSECAG00000017632 I 0.949
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.942
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.942
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.942
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.942
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.942
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.942
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.935
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.935
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.935
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.928
GCM2 Homo sapiens ENSG00000124827 D 0.928
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.928
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.928
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.928
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.928
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.920
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.920
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.920
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.913
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.913
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.913
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.906
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.906
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.906
Gcm2 Mus musculus ENSMUSG00000021362 I 0.906
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.899
GCM2 Procavia capensis ENSPCAG00000011887 I 0.899
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.899
GCM2 Echinops telfairi ENSETEG00000012473 I 0.898
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.884
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.884
Aan_R001550 Calypte anna Aan_R001550 I 0.877
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.877
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.877
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.870
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.870
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.870
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.870
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.862
GCM2 Gallus gallus ENSGALG00000012768 I 0.862
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.862
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.855
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.855
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.855
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.848
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.848
gcm2 Danio rerio ENSDARG00000045413 I 0.841
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.841
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.841
gcm2 Oryzias latipes ENSORLG00000019715 I 0.841
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.841
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.833
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.833
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.833
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.833
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.826
gcm2.S Xenopus laevis XB-GENE-866131 I 0.826
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.819
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.739
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.732
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.725
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.720
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.710
AGAP007783 Anopheles gambiae AGAP007783 I 0.703
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.703
Gcm1 Mus musculus ENSMUSG00000023333 D 0.703
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.703
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.703
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.703
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.696
MCINX011946 Melitaea cinxia MCINX011946 I 0.696
AALB008013 Anopheles albimanus AALB008013 I 0.696
HMEL005671 Heliconius melpomene HMEL005671 I 0.696
AMIN006368 Anopheles minimus AMIN006368 I 0.696
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.696
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.696
AAEL000623 Aedes aegypti AAEL000623 I 0.696
AMAM003661 Anopheles maculatus AMAM003661 I 0.696
ADIR000711 Anopheles dirus ADIR000711 I 0.696
AARA011980 Anopheles arabiensis AARA011980 I 0.696
GCM1 Equus caballus ENSECAG00000014228 I 0.696
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.696
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.696
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.696
AFUN009837 Anopheles funestus AFUN009837 I 0.696
ACHR001414 Anopheles christyi ACHR001414 I 0.693
AEPI007160 Anopheles epiroticus AEPI007160 I 0.693
TC014730 Tribolium castaneum TC014730 I 0.693
AMEM005966 Anopheles merus AMEM005966 I 0.690
ACOM031025 Anopheles coluzzii ACOM031025 I 0.690
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.688
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.688
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.688
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.688
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.688
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.688
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.688
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.688
GCM1 Homo sapiens ENSG00000137270 D 0.688
AFAF005680 Anopheles farauti AFAF005680 I 0.688
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.688
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.688
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.688
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.688
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.688
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.688
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.688
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.688
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.688
GCM1 Bos taurus ENSBTAG00000008148 I 0.688
ACUA009622 Anopheles culicifacies ACUA009622 I 0.686
KGM_05743 Danaus plexippus KGM_05743 I 0.686
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.681
Aan_R001196 Calypte anna Aan_R001196 I 0.681
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.681
AATE008476 Anopheles atroparvus AATE008476 I 0.681
GCM1 Gallus gallus ENSGALG00000016316 I 0.681
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.681
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.681
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.681
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.681
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.681
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.681
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.681
SINV21711 Solenopsis invicta SINV21711 I 0.681
ASIS002985 Anopheles sinensis ASIS002985 I 0.681
GCM1 Canis familiaris ENSCAFG00000002273 I 0.681
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.681
GCM1 Felis catus ENSFCAG00000009490 I 0.681
Tal_R009935 Tyto alba Tal_R009935 I 0.681
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.681
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.681
ADAC002327 Anopheles darlingi ADAC002327 I 0.679
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.674
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.674
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.674
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.674
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.674
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.674
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.674
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.674
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.674
GB45031 Apis mellifera GB45031 I 0.671
ACEP23384 Atta cephalotes ACEP23384 I 0.671
AMEC020313 Anopheles melas AMEC020313 I 0.671
AMAM005757 Anopheles maculatus AMAM005757 I 0.670
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.667
GF22779 Drosophila ananassae FBgn0099773 I 0.667
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.667
gcm2 Drosophila melanogaster FBgn0019809 D 0.667
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.667
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.667
GL18919 Drosophila persimilis FBgn0156520 I 0.667
GG10041 Drosophila erecta FBgn0102353 I 0.667
ISCW022914 Ixodes scapularis ISCW022914 I 0.667
L798_07938 Zootermopsis nevadensis L798_07938 I 0.667
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.664
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.664
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.664
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.664
CLEC013329 Cimex lectularius CLEC013329 I 0.664
RPRC001299 Rhodnius prolixus RPRC001299 I 0.664
GJ17916 Drosophila virilis FBgn0205084 I 0.659
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.659
PHUM436840 Pediculus humanus PHUM436840 I 0.659
MDOA003644 Musca domestica MDOA003644 I 0.659
MDOA004732 Musca domestica MDOA004732 I 0.659
GJ18313 Drosophila virilis FBgn0205472 I 0.659
GF21907 Drosophila ananassae FBgn0098907 I 0.659
GI17574 Drosophila mojavensis FBgn0140318 I 0.659
LCUP008083 Lucilia cuprina LCUP008083 I 0.659
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.658
GE18856 Drosophila yakuba FBgn0236239 I 0.657
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.657
GM12386 Drosophila sechellia FBgn0167323 I 0.652
AALB008012 Anopheles albimanus AALB008012 I 0.652
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.652
gcm Drosophila melanogaster FBgn0014179 D 0.652
NV17454 Nasonia vitripennis NV17454 I 0.652
Tal_R009965 Tyto alba Tal_R009965 I 0.650
GM17569 Drosophila sechellia FBgn0172477 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.650
GH10675 Drosophila grimshawi FBgn0118156 I 0.645
ASIS021139 Anopheles sinensis ASIS021139 I 0.645
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.645
GK23810 Drosophila willistoni FBgn0225772 I 0.645
GE10457 Drosophila yakuba FBgn0228318 I 0.645
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.643
GL19218 Drosophila persimilis FBgn0156817 I 0.643
GK23867 Drosophila willistoni FBgn0225829 I 0.638
GG24019 Drosophila erecta FBgn0116158 I 0.636
GH11056 Drosophila grimshawi FBgn0118537 I 0.636
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.630
GD22349 Drosophila simulans FBgn0193756 I 0.630
AATE020589 Anopheles atroparvus AATE020589 I 0.629
LotgiG112320 Lottia gigantea LotgiG112320 I 0.623
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.623
AGAP007782 Anopheles gambiae AGAP007782 I 0.623
AMEM008520 Anopheles merus AMEM008520 I 0.623
AEPI007161 Anopheles epiroticus AEPI007161 I 0.623
AFAF000663 Anopheles farauti AFAF000663 I 0.623
ACOM031032 Anopheles coluzzii ACOM031032 I 0.623
AARA011979 Anopheles arabiensis AARA011979 I 0.623
ACUA018162 Anopheles culicifacies ACUA018162 I 0.621
ACHR004082 Anopheles christyi ACHR004082 I 0.621
AMIN006367 Anopheles minimus AMIN006367 I 0.621
AAEL000631 Aedes aegypti AAEL000631 I 0.621
AFUN009836 Anopheles funestus AFUN009836 I 0.621
CapteG133139 Capitella teleta CapteG133139 I 0.616
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.614
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.614
ADIR000710 Anopheles dirus ADIR000710 I 0.614
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.609