GCM1 (Vicugna pacos)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSVPAG00000006379 T198074_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.934 0.934
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.934 0.934
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.934 0.934
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.934 0.934
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.934 0.934
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.934 0.934
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.934 0.934
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.934 0.934
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.934 0.934
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.926 0.926
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.919 0.919
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.904 0.904
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.838 0.838
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.721 0.721
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.699 0.699
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.691 0.691
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.676 0.676
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.676 0.676
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.676 0.676
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.676 0.676
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000005921 GCM 12 147

Links

Other GCM family TFs
Other Vicugna pacos TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.971
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.971
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.949
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.949
GCM1 Bos taurus ENSBTAG00000008148 I 0.949
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.949
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.949
GCM1 Canis familiaris ENSCAFG00000002273 I 0.949
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.949
GCM1 Felis catus ENSFCAG00000009490 I 0.949
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.942
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.934
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.934
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.926
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.926
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.922
GCM1 Homo sapiens ENSG00000137270 D 0.920
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.920
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.920
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.920
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.920
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.920
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.920
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.920
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.920
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.920
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.916
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.913
GCM1 Equus caballus ENSECAG00000014228 I 0.913
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.912
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.912
Gcm1 Mus musculus ENSMUSG00000023333 D 0.906
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.904
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.904
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.897
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.890
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.884
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.877
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.868
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.855
Aan_R001196 Calypte anna Aan_R001196 I 0.838
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.838
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.826
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.826
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.824
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.824
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.824
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.819
GCM1 Gallus gallus ENSGALG00000016316 I 0.819
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.816
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.816
Tal_R009935 Tyto alba Tal_R009935 I 0.812
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.812
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.750
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.739
gcm2 Danio rerio ENSDARG00000045413 I 0.728
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.728
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.721
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.721
Aan_R001550 Calypte anna Aan_R001550 I 0.721
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.721
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.721
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.721
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.721
GCM2 Gallus gallus ENSGALG00000012768 I 0.713
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.713
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.710
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.710
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.706
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.706
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.706
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.706
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.699
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.699
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.699
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.696
gcm2.S Xenopus laevis XB-GENE-866131 I 0.696
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.691
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.691
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.691
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.691
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.688
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.688
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.688
gcm2 Oryzias latipes ENSORLG00000019715 I 0.688
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.684
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.684
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.684
GCM2 Bos taurus ENSBTAG00000018787 I 0.684
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.681
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.681
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.676
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.676
GCM2 Felis catus ENSFCAG00000001608 I 0.676
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.676
GCM2 Canis familiaris ENSCAFG00000009747 I 0.676
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.676
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.676
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.676
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.676
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.674
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.674
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.674
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.674
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.669
GCM2 Equus caballus ENSECAG00000017632 I 0.669
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.669
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.669
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.669
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.669
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.667
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.667
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.667
Gcm2 Mus musculus ENSMUSG00000021362 I 0.667
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.667
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.667
GCM2 Homo sapiens ENSG00000124827 D 0.667
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.667
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.667
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.659
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.659
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.652
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.647
GCM2 Procavia capensis ENSPCAG00000011887 I 0.647
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.647
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.645
GCM2 Echinops telfairi ENSETEG00000012473 I 0.644
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.632
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.618
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.614
AFUN009837 Anopheles funestus AFUN009837 I 0.610
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.610
AAEL000623 Aedes aegypti AAEL000623 I 0.610
CapteG133139 Capitella teleta CapteG133139 I 0.610
AMEM005966 Anopheles merus AMEM005966 I 0.609
ACOM031025 Anopheles coluzzii ACOM031025 I 0.609