ENSXMAG00000002726 (Xiphophorus maculatus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSXMAG00000002726 T198075_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.913 0.913
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.913 0.913
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.877 0.877
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.841 0.841
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.841 0.841
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.841 0.841
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.841 0.841
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.732 0.732
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.725 0.725
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.725 0.725
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.710 0.710
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.710 0.710
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.710 0.710
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.710 0.710
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.710 0.710
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.710 0.710
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.710 0.710
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.710 0.710
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.710 0.710
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.710 0.710
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.659 0.659
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.659 0.659
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.659 0.659
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.659 0.659
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.652 0.652
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.652 0.652
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000002731 GCM 20 157

Links

Other GCM family TFs
Other Xiphophorus maculatus TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.986
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.949
gcm2 Oryzias latipes ENSORLG00000019715 I 0.935
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.928
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.920
gcm2 Danio rerio ENSDARG00000045413 I 0.913
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.913
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.913
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.899
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.891
gcm2.S Xenopus laevis XB-GENE-866131 I 0.884
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.884
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.877
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.877
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.877
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.877
Aan_R001550 Calypte anna Aan_R001550 I 0.877
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.877
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.877
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.877
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.870
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.870
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.870
GCM2 Gallus gallus ENSGALG00000012768 I 0.870
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.862
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.862
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.862
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.855
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.855
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.855
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.855
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.855
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.848
GCM2 Felis catus ENSFCAG00000001608 I 0.848
GCM2 Bos taurus ENSBTAG00000018787 I 0.848
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.848
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.848
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.848
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.848
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.848
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.848
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.848
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.848
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.841
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.841
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.841
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.841
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.841
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.841
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.841
GCM2 Homo sapiens ENSG00000124827 D 0.841
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.841
GCM2 Canis familiaris ENSCAFG00000009747 I 0.833
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.833
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.833
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.833
GCM2 Equus caballus ENSECAG00000017632 I 0.833
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.826
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.826
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.826
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.826
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.819
Gcm2 Mus musculus ENSMUSG00000021362 I 0.819
GCM2 Procavia capensis ENSPCAG00000011887 I 0.812
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.812
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.812
GCM2 Echinops telfairi ENSETEG00000012473 I 0.797
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.790
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.783
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.755
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.746
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.739
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.739
Tal_R009935 Tyto alba Tal_R009935 I 0.732
Gcm1 Mus musculus ENSMUSG00000023333 D 0.732
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.729
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.725
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.725
GCM1 Equus caballus ENSECAG00000014228 I 0.725
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.725
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.725
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.725
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.720
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.717
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.717
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.717
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.717
GCM1 Gallus gallus ENSGALG00000016316 I 0.717
Aan_R001196 Calypte anna Aan_R001196 I 0.717
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.717
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.717
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.717
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.710
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.710
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.710
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.710
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.710
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.710
GCM1 Felis catus ENSFCAG00000009490 I 0.710
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.710
GCM1 Homo sapiens ENSG00000137270 D 0.710
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.710
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.710
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.710
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.710
AGAP007783 Anopheles gambiae AGAP007783 I 0.710
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.710
GCM1 Bos taurus ENSBTAG00000008148 I 0.710
GCM1 Canis familiaris ENSCAFG00000002273 I 0.710
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.710
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.710
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.710
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.710
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.710
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.710
AMIN006368 Anopheles minimus AMIN006368 I 0.703
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.703
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.703
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.703
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.703
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.703
AAEL000623 Aedes aegypti AAEL000623 I 0.700
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.696
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.696
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.696
AFAF005680 Anopheles farauti AFAF005680 I 0.696
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.696
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.696
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.696
SMAR010130 Strigamia maritima SMAR010130 I 0.695
AEPI007160 Anopheles epiroticus AEPI007160 I 0.693
AARA011980 Anopheles arabiensis AARA011980 I 0.693
AMAM003661 Anopheles maculatus AMAM003661 I 0.693
ACUA009622 Anopheles culicifacies ACUA009622 I 0.693
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.693
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.691
ACOM031025 Anopheles coluzzii ACOM031025 I 0.690
AMEM005966 Anopheles merus AMEM005966 I 0.690
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.688
TC014730 Tribolium castaneum TC014730 I 0.686
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.686
AFUN009837 Anopheles funestus AFUN009837 I 0.686
ACHR001414 Anopheles christyi ACHR001414 I 0.686
ADIR000711 Anopheles dirus ADIR000711 I 0.686
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.686
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.686
GB45031 Apis mellifera GB45031 I 0.686
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.684
HMEL005671 Heliconius melpomene HMEL005671 I 0.681
L798_07938 Zootermopsis nevadensis L798_07938 I 0.681
MCINX011946 Melitaea cinxia MCINX011946 I 0.681
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.681
AMAM005757 Anopheles maculatus AMAM005757 I 0.679
AMEC020313 Anopheles melas AMEC020313 I 0.679
ACEP23384 Atta cephalotes ACEP23384 I 0.679
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.679
AATE008476 Anopheles atroparvus AATE008476 I 0.679
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.679
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.679
ASIS002985 Anopheles sinensis ASIS002985 I 0.679
ISCW022914 Ixodes scapularis ISCW022914 I 0.674
SINV21711 Solenopsis invicta SINV21711 I 0.671
KGM_05743 Danaus plexippus KGM_05743 I 0.671
RPRC001299 Rhodnius prolixus RPRC001299 I 0.671
AALB008013 Anopheles albimanus AALB008013 I 0.667
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.664
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.664
ASIS021139 Anopheles sinensis ASIS021139 I 0.664
CLEC013329 Cimex lectularius CLEC013329 I 0.664
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.662
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.659
NV17454 Nasonia vitripennis NV17454 I 0.659
gcm Drosophila melanogaster FBgn0014179 D 0.659
GM12386 Drosophila sechellia FBgn0167323 I 0.659
ADAC002327 Anopheles darlingi ADAC002327 I 0.657
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.657
GF21907 Drosophila ananassae FBgn0098907 I 0.657
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.657
AALB008012 Anopheles albimanus AALB008012 I 0.652
GI17574 Drosophila mojavensis FBgn0140318 I 0.652
GG10041 Drosophila erecta FBgn0102353 I 0.652
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.652
GF22779 Drosophila ananassae FBgn0099773 I 0.652
GJ17916 Drosophila virilis FBgn0205084 I 0.652
MDOA003644 Musca domestica MDOA003644 I 0.652
gcm2 Drosophila melanogaster FBgn0019809 D 0.652
PHUM436840 Pediculus humanus PHUM436840 I 0.650
MDOA004732 Musca domestica MDOA004732 I 0.650
AATE020589 Anopheles atroparvus AATE020589 I 0.650
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.650
GG24019 Drosophila erecta FBgn0116158 I 0.650
GE10457 Drosophila yakuba FBgn0228318 I 0.650
GK23810 Drosophila willistoni FBgn0225772 I 0.645
GJ18313 Drosophila virilis FBgn0205472 I 0.645
GE18856 Drosophila yakuba FBgn0236239 I 0.643
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.643
GL18919 Drosophila persimilis FBgn0156520 I 0.643
GL19218 Drosophila persimilis FBgn0156817 I 0.643
GM17569 Drosophila sechellia FBgn0172477 I 0.643
LCUP008083 Lucilia cuprina LCUP008083 I 0.643
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.643
CapteG133139 Capitella teleta CapteG133139 I 0.640
GK23867 Drosophila willistoni FBgn0225829 I 0.638
AEPI007161 Anopheles epiroticus AEPI007161 I 0.638
AGAP007782 Anopheles gambiae AGAP007782 I 0.638
AMEM008520 Anopheles merus AMEM008520 I 0.638
ACOM031032 Anopheles coluzzii ACOM031032 I 0.638
AARA011979 Anopheles arabiensis AARA011979 I 0.638
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.638
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.636
AMIN006367 Anopheles minimus AMIN006367 I 0.636
GH10675 Drosophila grimshawi FBgn0118156 I 0.636
GH11056 Drosophila grimshawi FBgn0118537 I 0.636
AFUN009836 Anopheles funestus AFUN009836 I 0.636
AAEL000631 Aedes aegypti AAEL000631 I 0.636
ACHR004082 Anopheles christyi ACHR004082 I 0.636
GI11073 Drosophila mojavensis FBgn0133835 I 0.636
ACUA018162 Anopheles culicifacies ACUA018162 I 0.636
Tal_R009965 Tyto alba Tal_R009965 I 0.634
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
AFAF000663 Anopheles farauti AFAF000663 I 0.629
GD22349 Drosophila simulans FBgn0193756 I 0.629
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.621
LotgiG112320 Lottia gigantea LotgiG112320 I 0.621
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.621
HelroG145480 Helobdella robusta HelroG145480 I 0.621
ADIR000710 Anopheles dirus ADIR000710 I 0.621
GCM2 Erinaceus europaeus ENSEEUG00000005577 I 0.615
BGLB002570 Biomphalaria glabrata BGLB002570 I 0.614
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.609