GA17734 (Drosophila pseudoobscura)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 FBgn0077744 T198079_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.964 0.964
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.964 0.964
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.964 0.964
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.707 0.707
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.707 0.707
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.707 0.707
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.707 0.707
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.664 0.664
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.664 0.664
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.664 0.664
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.664 0.664
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.643 0.643
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.643 0.643
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.636 0.636
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0280243 GCM 63 203

Links

Other GCM family TFs
Other Drosophila pseudoobscura TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF711 Anolis carolinensis ENSACAG00000014034 N 0.000
Pvit_08921 Pogona vitticeps Pvit_08921 N 0.000
Ogr04055 Ophisaurus gracilis Ogr04055 N 0.000
Gfo_R008521 Geospiza fortis Gfo_R008521 N 0.000
Alligator_sinensis_CCG016799.1 Alligator sinensis Alligator_sinensis_CCG016799.1 N 0.000
Afo_R014155 Aptenodytes forsteri Afo_R014155 N 0.000
Aan_R004750 Calypte anna Aan_R004750 N 0.000
ZNF711 Taeniopygia guttata ENSTGUG00000002466 N 0.000
ENSPSIG00000003246 Pelodiscus sinensis ENSPSIG00000003246 N 0.000
ZNF711 Monodelphis domestica ENSMODG00000014346 N 0.000
ENSFALG00000004005 Ficedula albicollis ENSFALG00000004005 N 0.000
ENSAPLG00000007311 Anas platyrhynchos ENSAPLG00000007311 N 0.000
Tal_R004476 Tyto alba Tal_R004476 N 0.000