GA17734 (Drosophila pseudoobscura)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 FBgn0077744 T198079_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.964 0.964
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.964 0.964
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.964 0.964
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.707 0.707
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.707 0.707
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.707 0.707
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.707 0.707
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.664 0.664
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.664 0.664
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.664 0.664
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.664 0.664
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.643 0.643
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.643 0.643
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.636 0.636
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0280243 GCM 63 203

Links

Other GCM family TFs
Other Drosophila pseudoobscura TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.707
AAEL000623 Aedes aegypti AAEL000623 I 0.750
AAEL000631 Aedes aegypti AAEL000631 I 0.700
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.650
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.645
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.652
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.614
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.610
AALB008012 Anopheles albimanus AALB008012 I 0.700
AALB008013 Anopheles albimanus AALB008013 I 0.743
AARA011979 Anopheles arabiensis AARA011979 I 0.679
AARA011980 Anopheles arabiensis AARA011980 I 0.750
AATE008476 Anopheles atroparvus AATE008476 I 0.743
AATE020589 Anopheles atroparvus AATE020589 I 0.686
ACHR004082 Anopheles christyi ACHR004082 I 0.679
ACHR001414 Anopheles christyi ACHR001414 I 0.757
ACOM031025 Anopheles coluzzii ACOM031025 I 0.770
ACOM031032 Anopheles coluzzii ACOM031032 I 0.679
ACUA009622 Anopheles culicifacies ACUA009622 I 0.757
ACUA018162 Anopheles culicifacies ACUA018162 I 0.679
ADAC002327 Anopheles darlingi ADAC002327 I 0.743
ADIR000711 Anopheles dirus ADIR000711 I 0.764
ADIR000710 Anopheles dirus ADIR000710 I 0.679
AEPI007161 Anopheles epiroticus AEPI007161 I 0.679
AEPI007160 Anopheles epiroticus AEPI007160 I 0.764
AFAF000663 Anopheles farauti AFAF000663 I 0.679
AFAF005680 Anopheles farauti AFAF005680 I 0.750
AFUN009836 Anopheles funestus AFUN009836 I 0.679
AFUN009837 Anopheles funestus AFUN009837 I 0.764
AGAP007783 Anopheles gambiae AGAP007783 I 0.757
AGAP007782 Anopheles gambiae AGAP007782 I 0.679
AMAM003661 Anopheles maculatus AMAM003661 I 0.757
AMAM005757 Anopheles maculatus AMAM005757 I 0.706
AMEC020313 Anopheles melas AMEC020313 I 0.750
AMEM005966 Anopheles merus AMEM005966 I 0.770
AMEM008520 Anopheles merus AMEM008520 I 0.679
AMIN006367 Anopheles minimus AMIN006367 I 0.679
AMIN006368 Anopheles minimus AMIN006368 I 0.757
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.757
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.679
ASIS002985 Anopheles sinensis ASIS002985 I 0.750
ASIS021139 Anopheles sinensis ASIS021139 I 0.686
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.679
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.757
GB45031 Apis mellifera GB45031 I 0.700
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.643
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.629
ACEP23384 Atta cephalotes ACEP23384 I 0.700
BGLB002570 Biomphalaria glabrata BGLB002570 I 0.614
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.721
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.674
GCM2 Bos taurus ENSBTAG00000018787 I 0.664
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.683
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.671
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.643
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.664
Aan_R001550 Calypte anna Aan_R001550 I 0.652
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.714
GCM2 Canis familiaris ENSCAFG00000009747 I 0.667
CapteG133139 Capitella teleta CapteG133139 I 0.654
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.659
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.650
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.674
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.657
CLEC013329 Cimex lectularius CLEC013329 I 0.700
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.686
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.664
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.729
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.729
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.664
KGM_05743 Danaus plexippus KGM_05743 I 0.729
gcm2 Danio rerio ENSDARG00000045413 I 0.643
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.657
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.667
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.729
GF21907 Drosophila ananassae FBgn0098907 I 0.721
GF22779 Drosophila ananassae FBgn0099773 I 0.964
GG24019 Drosophila erecta FBgn0116158 I 0.700
GG10041 Drosophila erecta FBgn0102353 I 0.964
GH11056 Drosophila grimshawi FBgn0118537 I 0.721
GH10675 Drosophila grimshawi FBgn0118156 I 0.950
gcm2 Drosophila melanogaster FBgn0019809 D 0.964
gcm Drosophila melanogaster FBgn0014179 D 0.707
GI11073 Drosophila mojavensis FBgn0133835 I 0.943
GI17574 Drosophila mojavensis FBgn0140318 I 0.736
GL18919 Drosophila persimilis FBgn0156520 I 1.000
GL19218 Drosophila persimilis FBgn0156817 I 0.707
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.707
GM17569 Drosophila sechellia FBgn0172477 I 0.957
GM12386 Drosophila sechellia FBgn0167323 I 0.707
GD22349 Drosophila simulans FBgn0193756 I 0.679
GJ17916 Drosophila virilis FBgn0205084 I 0.743
GJ18313 Drosophila virilis FBgn0205472 I 0.943
GK23810 Drosophila willistoni FBgn0225772 I 0.693
GK23867 Drosophila willistoni FBgn0225829 I 0.921
GE18856 Drosophila yakuba FBgn0236239 I 0.964
GE10457 Drosophila yakuba FBgn0228318 I 0.707
GCM2 Echinops telfairi ENSETEG00000012473 I 0.686
GCM2 Equus caballus ENSECAG00000017632 I 0.657
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.647
GCM2 Felis catus ENSFCAG00000001608 I 0.657
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.643
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.621
GCM2 Gallus gallus ENSGALG00000012768 I 0.636
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.659
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.643
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.674
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.707
HMEL005671 Heliconius melpomene HMEL005671 I 0.721
HelroG145480 Helobdella robusta HelroG145480 I 0.647
GCM2 Homo sapiens ENSG00000124827 D 0.674
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.652
ISCW022914 Ixodes scapularis ISCW022914 I 0.664
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.645
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.645
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.714
LotgiG112320 Lottia gigantea LotgiG112320 I 0.629
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.650
LCUP008083 Lucilia cuprina LCUP008083 I 0.900
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.674
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.674
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.609
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.638
MCINX011946 Melitaea cinxia MCINX011946 I 0.721
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.667
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.609
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.650
MDOA004732 Musca domestica MDOA004732 I 0.721
MDOA003644 Musca domestica MDOA003644 I 0.900
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.667
Gcm2 Mus musculus ENSMUSG00000021362 I 0.652
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.674
NV17454 Nasonia vitripennis NV17454 I 0.686
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.657
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.636
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.679
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.667
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.643
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.657
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.626
gcm2 Oryzias latipes ENSORLG00000019715 I 0.659
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.650
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.664
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.681
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.674
PHUM436840 Pediculus humanus PHUM436840 I 0.700
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.645
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.729
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.652
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.638
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.674
GCM2 Procavia capensis ENSPCAG00000011887 I 0.643
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.621
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.652
RPRC001299 Rhodnius prolixus RPRC001299 I 0.700
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.650
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.645
SINV21711 Solenopsis invicta SINV21711 I 0.693
SMAR010130 Strigamia maritima SMAR010130 I 0.695
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.643
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.643
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.650
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.707
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.645
TC014730 Tribolium castaneum TC014730 I 0.729
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.643
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.657
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.667
gcm2.S Xenopus laevis XB-GENE-866131 I 0.645
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.609
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.629
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.643
L798_07938 Zootermopsis nevadensis L798_07938 I 0.693