CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HelroG145480
(
Helobdella robusta
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03615 (GCM)
IPR003902
HelroG145480
T198110_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.638
0.638
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.638
0.638
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.638
0.638
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.638
0.638
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.638
0.638
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.638
0.638
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.638
0.638
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.629
0.629
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.621
0.621
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD
HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.621
0.621
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN
NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.621
0.621
GCM2
M10602_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.621
0.621
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN
NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.621
0.621
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.612
0.612
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HelroP145480
GCM
1
117
TFDAWPDGHVQKIYSALMSVEAQKHYSGWAMRNTNNHNVAILKKSCLGAFLLLLPAICDKARSKQLEKPCPKPGCSGKLELTPCRGQSGFPVTHFWRSCGDMVYFQGKGHHDHPRPQ
Links
Other
GCM
family TFs
Other
Helobdella robusta
TFs
92 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GF21907
Drosophila ananassae
FBgn0098907
I
0.647
GA17734
Drosophila pseudoobscura
FBgn0077744
I
0.647
CapteG133139
Capitella teleta
CapteG133139
I
0.647
GL18919
Drosophila persimilis
FBgn0156520
I
0.647
GM12386
Drosophila sechellia
FBgn0167323
I
0.638
GCM2
Procavia capensis
ENSPCAG00000011887
I
0.638
GF22779
Drosophila ananassae
FBgn0099773
I
0.638
GE10457
Drosophila yakuba
FBgn0228318
I
0.638
gcm2
Drosophila melanogaster
FBgn0019809
D
0.638
GCM2
Loxodonta africana
ENSLAFG00000007475
I
0.638
MDOA004732
Musca domestica
MDOA004732
I
0.638
GG10041
Drosophila erecta
FBgn0102353
I
0.638
gcm
Drosophila melanogaster
FBgn0014179
D
0.638
GJ17916
Drosophila virilis
FBgn0205084
I
0.629
GI17574
Drosophila mojavensis
FBgn0140318
I
0.629
GK23867
Drosophila willistoni
FBgn0225829
I
0.629
MCINX011946
Melitaea cinxia
MCINX011946
I
0.629
ENSOARG00000015521
Ovis aries
ENSOARG00000015521
I
0.629
AFAF005680
Anopheles farauti
AFAF005680
I
0.629
ENSAMEG00000002669
Ailuropoda melanoleuca
ENSAMEG00000002669
I
0.629
DAPPUDRAFT_26189
Daphnia pulex
DAPPUDRAFT_26189
I
0.629
MDOA003644
Musca domestica
MDOA003644
I
0.629
LCUP008083
Lucilia cuprina
LCUP008083
I
0.629
GCM2
Taeniopygia guttata
ENSTGUG00000005756
D
0.629
ADIR000711
Anopheles dirus
ADIR000711
I
0.629
AMIN006368
Anopheles minimus
AMIN006368
I
0.629
GCM2
Bos taurus
ENSBTAG00000018787
I
0.629
GJ18313
Drosophila virilis
FBgn0205472
I
0.621
Brh_R007088
Buceros rhinoceros
Brh_R007088
I
0.621
AFUN009837
Anopheles funestus
AFUN009837
I
0.621
AARA011980
Anopheles arabiensis
AARA011980
I
0.621
AMAM003661
Anopheles maculatus
AMAM003661
I
0.621
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.621
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.621
ASIS002985
Anopheles sinensis
ASIS002985
I
0.621
Sakowv30018670m.g
Saccoglossus kowalevskii
Sakowv30018670m.g
I
0.621
Pvit_11235
Pogona vitticeps
Pvit_11235
I
0.621
Aan_R001550
Calypte anna
Aan_R001550
I
0.621
LotgiG112320
Lottia gigantea
LotgiG112320
I
0.621
Afo_R013226
Aptenodytes forsteri
Afo_R013226
I
0.621
ENSXMAG00000002726
Xiphophorus maculatus
ENSXMAG00000002726
I
0.621
Gfo_R006501
Geospiza fortis
Gfo_R006501
I
0.621
ENSP00000368805
Macaca fascicularis
ENSP00000368805
I
0.621
HMEL005671
Heliconius melpomene
HMEL005671
I
0.621
GCM2
Tursiops truncatus
ENSTTRG00000003674
I
0.621
GCM2
Canis familiaris
ENSCAFG00000009747
I
0.621
GCM2
Choloepus hoffmanni
ENSCHOG00000011562
I
0.621
ENSMICG00000004238
Microcebus murinus
ENSMICG00000004238
I
0.621
GCM2
Myotis lucifugus
ENSMLUG00000004637
I
0.621
ENSAMXG00000006073
Astyanax mexicanus
ENSAMXG00000006073
I
0.621
GCM2
Macaca mulatta
ENSMMUG00000007719
I
0.621
GCM2
Callithrix jacchus
ENSCJAG00000019182
I
0.621
GCM2
Gorilla gorilla
ENSGGOG00000023360
I
0.621
ENSFALG00000013344
Ficedula albicollis
ENSFALG00000013344
I
0.621
GCM2
Equus caballus
ENSECAG00000017632
I
0.621
GCM2
Felis catus
ENSFCAG00000001608
I
0.621
GCM2
Homo sapiens
ENSG00000124827
D
0.621
ENSCSAG00000007467
Chlorocebus sabaeus
ENSCSAG00000007467
I
0.621
GCM2
Monodelphis domestica
ENSMODG00000010371
I
0.621
ENSMPUG00000000633
Mustela putorius furo
ENSMPUG00000000633
I
0.621
ENSPPYG00000016228
Pongo abelii
ENSPPYG00000016228
I
0.621
GCM2
Pan troglodytes
ENSPTRG00000017724
I
0.621
Gcm2
Rattus norvegicus
ENSRNOG00000015008
I
0.621
ENSTSYG00000006813
Tarsius syrichta
ENSTSYG00000006813
I
0.621
GCM2
Ochotona princeps
ENSOPRG00000012641
I
0.621
gcm2
Oryzias latipes
ENSORLG00000019715
I
0.621
ENSNLEG00000000645
Nomascus leucogenys
ENSNLEG00000000645
I
0.621
GCM2
Oryctolagus cuniculus
ENSOCUG00000017698
I
0.621
BGIBMGA006182
Bombyx mori
BGIBMGA006182
I
0.621
AGAP007783
Anopheles gambiae
AGAP007783
I
0.621
T265_00115
Opisthorchis viverrini
T265_00115
I
0.612
gcm2
Danio rerio
ENSDARG00000045413
I
0.612
csin108204
Clonorchis sinensis
csin108204
I
0.612
GCM2
Anolis carolinensis
ENSACAG00000008677
I
0.612
AALB008013
Anopheles albimanus
AALB008013
I
0.612
PPAI003635
Phlebotomus papatasi
PPAI003635
I
0.612
ENSCPOG00000006856
Cavia porcellus
ENSCPOG00000006856
I
0.612
Cflo_04549--XP_393815.2_APIME
Camponotus floridanus
Cflo_04549--XP_393815.2_APIME
I
0.612
GCM2
Ornithorhynchus anatinus
ENSOANG00000007191
I
0.612
GK23810
Drosophila willistoni
FBgn0225772
I
0.612
GCM2
Otolemur garnettii
ENSOGAG00000012176
I
0.612
ENSONIG00000009885
Oreochromis niloticus
ENSONIG00000009885
I
0.612
ENSTRUG00000003586
Takifugu rubripes
ENSTRUG00000003586
D
0.612
GCM2
Tupaia belangeri
ENSTBEG00000006181
I
0.612
L798_07938
Zootermopsis nevadensis
L798_07938
I
0.612
GCM2
Meleagris gallopavo
ENSMGAG00000003533
I
0.612
GCM2
Gallus gallus
ENSGALG00000012768
I
0.612
gcm2
Xenopus tropicalis
XB-GENE-492156
I
0.612
Cmyd_10006831
Chelonia mydas
Cmyd_10006831
I
0.612
AAEL000623
Aedes aegypti
AAEL000623
I
0.612
ENSGMOG00000012709
Gadus morhua
ENSGMOG00000012709
I
0.612
gcm2.S
Xenopus laevis
XB-GENE-866131
I
0.612