Alligator_sinensis_CCG000160.1 (Alligator sinensis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 Alligator_sinensis_CCG000160.1 T198156_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.854 0.854
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.823 0.823
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.815 0.815
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.785 0.785
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.785 0.785
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.785 0.785
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.785 0.785
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.785 0.785
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.785 0.785
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.785 0.785
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.785 0.785
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.785 0.785
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.762 0.762
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.662 0.662
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.654 0.654
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.646 0.646
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.646 0.646
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.646 0.646
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.646 0.646
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.646 0.646
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG000160.1 GCM 39 168

Links

Other GCM family TFs
Other Alligator sinensis TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.854
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.854
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.853
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.846
Aan_R001196 Calypte anna Aan_R001196 I 0.846
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.846
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.846
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.842
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.819
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.808
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.808
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.808
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.804
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.804
GCM1 Gallus gallus ENSGALG00000016316 I 0.797
Tal_R009935 Tyto alba Tal_R009935 I 0.797
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.785
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.785
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.777
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.777
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.777
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.775
Gcm1 Mus musculus ENSMUSG00000023333 D 0.775
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.769
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.768
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.762
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.762
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.762
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.754
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.746
GCM1 Canis familiaris ENSCAFG00000002273 I 0.746
GCM1 Felis catus ENSFCAG00000009490 I 0.746
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.739
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.739
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.739
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.739
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.739
GCM1 Equus caballus ENSECAG00000014228 I 0.739
GCM1 Homo sapiens ENSG00000137270 D 0.739
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.739
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.739
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.739
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.739
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.739
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.739
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.737
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.732
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.732
GCM1 Bos taurus ENSBTAG00000008148 I 0.732
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.732
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.725
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.721
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.720
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.717
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.710
GCM2 Echinops telfairi ENSETEG00000012473 I 0.703
gcm2 Danio rerio ENSDARG00000045413 I 0.692
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.688
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.685
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.674
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.669
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.669
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.662
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.662
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.662
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.662
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.662
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.662
GCM2 Gallus gallus ENSGALG00000012768 I 0.662
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.662
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.659
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.654
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.654
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.654
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.654
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.646
GCM2 Equus caballus ENSECAG00000017632 I 0.646
GCM2 Bos taurus ENSBTAG00000018787 I 0.646
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.646
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.646
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.646
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.638
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.638
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.638
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.638
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.638
GCM2 Felis catus ENSFCAG00000001608 I 0.638
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.638
AMEM005966 Anopheles merus AMEM005966 I 0.632
ACOM031025 Anopheles coluzzii ACOM031025 I 0.632
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.631
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.631
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.631
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.631
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.631
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.631
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.625
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.623
Aan_R001550 Calypte anna Aan_R001550 I 0.623
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.623
GCM2 Procavia capensis ENSPCAG00000011887 I 0.623
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.623
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.623
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.623
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.623
gcm2 Oryzias latipes ENSORLG00000019715 I 0.616
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.616
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.616
gcm2.S Xenopus laevis XB-GENE-866131 I 0.616
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.616
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.609
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.609
GCM2 Homo sapiens ENSG00000124827 D 0.609
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.609
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.609
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.609
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.609
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.609
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.609
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.609
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.608