Gfo_R013721 (Geospiza fortis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 Gfo_R013721 T198167_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.971 0.971
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.877 0.877
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.870 0.870
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.862 0.862
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.862 0.862
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.862 0.862
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.862 0.862
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.862 0.862
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.862 0.862
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.862 0.862
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.862 0.862
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.862 0.862
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.848 0.848
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.739 0.739
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.725 0.725
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.710 0.710
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.696 0.696
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.696 0.696
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.696 0.696
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.696 0.696
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.609 0.609
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.609 0.609
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R013721 GCM 39 176

Links

Other GCM family TFs
Other Geospiza fortis TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.978
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.978
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.978
GCM1 Gallus gallus ENSGALG00000016316 I 0.971
Aan_R001196 Calypte anna Aan_R001196 I 0.971
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.971
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.964
Tal_R009935 Tyto alba Tal_R009935 I 0.964
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.957
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.920
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.891
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.884
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.884
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.877
Gcm1 Mus musculus ENSMUSG00000023333 D 0.877
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.877
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.870
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.869
GCM1 Homo sapiens ENSG00000137270 D 0.862
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.862
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.862
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.862
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.862
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.862
GCM1 Equus caballus ENSECAG00000014228 I 0.862
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.862
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.862
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.862
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.862
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.860
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.856
GCM1 Felis catus ENSFCAG00000009490 I 0.855
GCM1 Canis familiaris ENSCAFG00000002273 I 0.855
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.855
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.855
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.855
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.854
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.854
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.848
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.848
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.847
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.846
GCM1 Bos taurus ENSBTAG00000008148 I 0.841
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.841
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.841
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.833
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.833
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.833
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.833
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.833
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.833
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.833
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.824
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.819
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.797
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.790
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.783
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.754
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.754
gcm2 Danio rerio ENSDARG00000045413 I 0.754
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.746
GCM2 Gallus gallus ENSGALG00000012768 I 0.746
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.746
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.746
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.739
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.739
Aan_R001550 Calypte anna Aan_R001550 I 0.739
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.739
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.739
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.739
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.739
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.733
gcm2.S Xenopus laevis XB-GENE-866131 I 0.732
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.732
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.732
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.732
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.732
gcm2 Oryzias latipes ENSORLG00000019715 I 0.725
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.725
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.725
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.725
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.717
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.717
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.717
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.717
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.717
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.710
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.710
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.710
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.703
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.703
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.703
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.703
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.703
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.703
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.696
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.696
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.696
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.696
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.696
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.696
Gcm2 Mus musculus ENSMUSG00000021362 I 0.696
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.696
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.696
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.696
GCM2 Bos taurus ENSBTAG00000018787 I 0.696
GCM2 Equus caballus ENSECAG00000017632 I 0.696
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.696
GCM2 Homo sapiens ENSG00000124827 D 0.696
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.696
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.688
GCM2 Canis familiaris ENSCAFG00000009747 I 0.688
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.688
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.688
GCM2 Felis catus ENSFCAG00000001608 I 0.688
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.688
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.688
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.688
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.688
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.681
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.681
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.681
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.681
SMAR010130 Strigamia maritima SMAR010130 I 0.678
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.674
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.674
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.674
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.674
GCM2 Procavia capensis ENSPCAG00000011887 I 0.674
GCM2 Echinops telfairi ENSETEG00000012473 I 0.669
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.643
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.636
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.630
AMIN006368 Anopheles minimus AMIN006368 I 0.630
AGAP007783 Anopheles gambiae AGAP007783 I 0.630
AFUN009837 Anopheles funestus AFUN009837 I 0.629
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.629
HMEL005671 Heliconius melpomene HMEL005671 I 0.623
AFAF005680 Anopheles farauti AFAF005680 I 0.623
ACHR001414 Anopheles christyi ACHR001414 I 0.621
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.621
AMAM003661 Anopheles maculatus AMAM003661 I 0.621
ACUA009622 Anopheles culicifacies ACUA009622 I 0.621
AAEL000623 Aedes aegypti AAEL000623 I 0.621
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.621
AEPI007160 Anopheles epiroticus AEPI007160 I 0.621
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.617
AALB008013 Anopheles albimanus AALB008013 I 0.616
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.616
L798_07938 Zootermopsis nevadensis L798_07938 I 0.616
AMAM005757 Anopheles maculatus AMAM005757 I 0.615
ADIR000711 Anopheles dirus ADIR000711 I 0.614
GB45031 Apis mellifera GB45031 I 0.614
KGM_05743 Danaus plexippus KGM_05743 I 0.614
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.614
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.614
AARA011980 Anopheles arabiensis AARA011980 I 0.614
MCINX011946 Melitaea cinxia MCINX011946 I 0.614
ACEP23384 Atta cephalotes ACEP23384 I 0.614
AMEM005966 Anopheles merus AMEM005966 I 0.609
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.609
gcm2 Drosophila melanogaster FBgn0019809 D 0.609
GF22779 Drosophila ananassae FBgn0099773 I 0.609
GG10041 Drosophila erecta FBgn0102353 I 0.609
ISCW022914 Ixodes scapularis ISCW022914 I 0.609
ACOM031025 Anopheles coluzzii ACOM031025 I 0.609