Ogr12931 (Ophisaurus gracilis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 Ogr12931 T198171_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.795 0.795
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.780 0.780
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.773 0.773
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.750 0.750
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.750 0.750
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.750 0.750
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.750 0.750
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.674 0.674
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.674 0.674
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.674 0.674
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.674 0.674
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.674 0.674
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.674 0.674
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.674 0.674
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.674 0.674
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.674 0.674
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.674 0.674
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.667 0.667
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.659 0.659
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.652 0.652
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.621 0.621
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.621 0.621
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.621 0.621
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr12931 GCM 35 171

Links

Other GCM family TFs
Other Ophisaurus gracilis TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.856
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.848
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.818
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.818
GCM2 Echinops telfairi ENSETEG00000012473 I 0.805
gcm2 Danio rerio ENSDARG00000045413 I 0.803
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.795
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.795
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.795
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.795
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.795
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.790
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.788
GCM2 Gallus gallus ENSGALG00000012768 I 0.773
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.773
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.768
Aan_R001550 Calypte anna Aan_R001550 I 0.768
gcm2.S Xenopus laevis XB-GENE-866131 I 0.761
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.761
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.758
GCM2 Equus caballus ENSECAG00000017632 I 0.758
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.758
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.758
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.758
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.755
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.754
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.754
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.754
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.754
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.750
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.750
GCM2 Felis catus ENSFCAG00000001608 I 0.750
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.750
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.746
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.746
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.746
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.742
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.742
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.739
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.739
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.739
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.735
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.735
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.732
gcm2 Oryzias latipes ENSORLG00000019715 I 0.732
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.725
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.725
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.725
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.717
GCM2 Homo sapiens ENSG00000124827 D 0.717
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.717
GCM2 Canis familiaris ENSCAFG00000009747 I 0.717
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.717
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.717
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.717
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.717
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.717
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.717
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.717
GCM2 Bos taurus ENSBTAG00000018787 I 0.717
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.711
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.710
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.710
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.710
Gcm2 Mus musculus ENSMUSG00000021362 I 0.703
GCM2 Procavia capensis ENSPCAG00000011887 I 0.703
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.703
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.703
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.697
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.696
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.688
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.674
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.674
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.674
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.674
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.669
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.667
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.667
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.667
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.667
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.667
Aan_R001196 Calypte anna Aan_R001196 I 0.667
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.659
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.659
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.659
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.659
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.652
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.652
Tal_R009935 Tyto alba Tal_R009935 I 0.652
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.645
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.645
GCM1 Homo sapiens ENSG00000137270 D 0.645
GCM1 Equus caballus ENSECAG00000014228 I 0.645
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.645
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.645
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.645
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.645
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.645
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.645
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.645
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.645
AMEM005966 Anopheles merus AMEM005966 I 0.644
ACOM031025 Anopheles coluzzii ACOM031025 I 0.644
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.644
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.644
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.642
GCM1 Canis familiaris ENSCAFG00000002273 I 0.638
GCM1 Gallus gallus ENSGALG00000016316 I 0.638
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.638
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.638
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.638
GCM1 Felis catus ENSFCAG00000009490 I 0.638
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.638
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.638
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.638
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.636
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.636
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.630
GCM1 Bos taurus ENSBTAG00000008148 I 0.630
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.630
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.630
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.630
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.630
Gcm1 Mus musculus ENSMUSG00000023333 D 0.630
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.630
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.630
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.629
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.623
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.623
GF22779 Drosophila ananassae FBgn0099773 I 0.621
gcm2 Drosophila melanogaster FBgn0019809 D 0.621
GG10041 Drosophila erecta FBgn0102353 I 0.621
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.618
MDOA003644 Musca domestica MDOA003644 I 0.614
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.614
GJ18313 Drosophila virilis FBgn0205472 I 0.614
AALB008013 Anopheles albimanus AALB008013 I 0.614
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.609