CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Tal_R009965
(
Tyto alba
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03615 (GCM)
IPR003902
Tal_R009965
T198175_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.740
0.740
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD
HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.675
0.675
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN
NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.675
0.675
GCM2
M10602_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.675
0.675
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN
NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.675
0.675
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.642
0.642
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.626
0.626
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Tal_R009965
GCM
10
132
FDAFQEWPDGYVRLIYSSEEKNAQRHLSGRGPRLKADHIALELCLRSDNILTFPVSSVVSLSLFAEKACPNCNSALELIPCRGHSGYPVTNFWRLDGKAIFFQAKGVHDHPRPESKLEAEARR
Links
Other
GCM
family TFs
Other
Tyto alba
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy