gw.285.88.1 (Branchiostoma floridae)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 gw.285.88.1 T198178_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.692 0.692
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.692 0.692
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.692 0.692
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.642 0.642
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.642 0.642
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.642 0.642
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.642 0.642
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.642 0.642
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.642 0.642
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.642 0.642
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.642 0.642
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.633 0.633
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.617 0.617
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.617 0.617
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.617 0.617
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.285.88.1 GCM 2 121

Links

Other GCM family TFs
Other Branchiostoma floridae TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.850
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.708
GJ18313 Drosophila virilis FBgn0205472 I 0.708
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.708
gcm2 Drosophila melanogaster FBgn0019809 D 0.692
GG10041 Drosophila erecta FBgn0102353 I 0.692
MDOA003644 Musca domestica MDOA003644 I 0.692
GF22779 Drosophila ananassae FBgn0099773 I 0.692
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.683
HMEL005671 Heliconius melpomene HMEL005671 I 0.683
MCINX011946 Melitaea cinxia MCINX011946 I 0.683
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.683
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.683
GL18919 Drosophila persimilis FBgn0156520 I 0.683
L798_07938 Zootermopsis nevadensis L798_07938 I 0.675
SINV21711 Solenopsis invicta SINV21711 I 0.675
LCUP008083 Lucilia cuprina LCUP008083 I 0.675
AAEL000623 Aedes aegypti AAEL000623 I 0.667
GK23867 Drosophila willistoni FBgn0225829 I 0.667
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.667
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.658
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.658
AGAP007782 Anopheles gambiae AGAP007782 I 0.658
NV17454 Nasonia vitripennis NV17454 I 0.658
GK23810 Drosophila willistoni FBgn0225772 I 0.658
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.658
AMIN006368 Anopheles minimus AMIN006368 I 0.658
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.658
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.658
AMAM003661 Anopheles maculatus AMAM003661 I 0.658
AMEM008520 Anopheles merus AMEM008520 I 0.658
AFUN009837 Anopheles funestus AFUN009837 I 0.658
AFAF000663 Anopheles farauti AFAF000663 I 0.658
AEPI007161 Anopheles epiroticus AEPI007161 I 0.658
AARA011979 Anopheles arabiensis AARA011979 I 0.658
ACOM031032 Anopheles coluzzii ACOM031032 I 0.658
GCM2 Echinops telfairi ENSETEG00000012473 I 0.653
GCM2 Canis familiaris ENSCAFG00000009747 I 0.650
GJ17916 Drosophila virilis FBgn0205084 I 0.650
GI17574 Drosophila mojavensis FBgn0140318 I 0.650
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.650
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.650
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.650
AALB008012 Anopheles albimanus AALB008012 I 0.650
PHUM436840 Pediculus humanus PHUM436840 I 0.650
ISCW022914 Ixodes scapularis ISCW022914 I 0.650
AGAP007783 Anopheles gambiae AGAP007783 I 0.650
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.650
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.650
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.650
GCM2 Equus caballus ENSECAG00000017632 I 0.650
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.650
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.642
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.642
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.642
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.642
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.642
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.642
GCM2 Felis catus ENSFCAG00000001608 I 0.642
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.642
AFAF005680 Anopheles farauti AFAF005680 I 0.642
ADIR000711 Anopheles dirus ADIR000711 I 0.642
AARA011980 Anopheles arabiensis AARA011980 I 0.642
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.642
AALB008013 Anopheles albimanus AALB008013 I 0.642
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.642
GM12386 Drosophila sechellia FBgn0167323 I 0.642
GCM2 Bos taurus ENSBTAG00000018787 I 0.642
gcm Drosophila melanogaster FBgn0014179 D 0.642
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.642
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.633
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.633
GCM2 Procavia capensis ENSPCAG00000011887 I 0.633
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.633
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.633
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.633
gcm2 Danio rerio ENSDARG00000045413 I 0.633
CapteG133139 Capitella teleta CapteG133139 I 0.633
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.633
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.633
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.633
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.633
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.633
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.633
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.633
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.633
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.633
AMEM005966 Anopheles merus AMEM005966 I 0.632
ACOM031025 Anopheles coluzzii ACOM031025 I 0.632
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.627
GCM2 Gallus gallus ENSGALG00000012768 I 0.625
Aan_R001550 Calypte anna Aan_R001550 I 0.625
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.625
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.625
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.625
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.617
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.617
Aan_R001196 Calypte anna Aan_R001196 I 0.617
Tal_R009935 Tyto alba Tal_R009935 I 0.617
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.617
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.617
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.617
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.617
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.617
GH10675 Drosophila grimshawi FBgn0118156 I 0.614
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.608
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.608