TF Information

gw.943.3.1 *(Branchiostoma floridae)* GCM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03615 (GCM)	IPR003902	gw.943.3.1	T198179_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
gcm M03764_2.00	Drosophila melanogaster	HATGCGGGYVVBRCCCGCATV	BATGCGGGYVBBRCCCGCATD	SELEX Nitta et al.(2015) gcm_1	0.763	0.763
gcm M03765_2.00	Drosophila melanogaster	VATGCKGGYRCCMGCATV	BATGCKGGYRCCMGCATB	SELEX Nitta et al.(2015) gcm_2	0.763	0.763
gcm M03766_2.00	Drosophila melanogaster	YATGCGGGTACCAGCATV	BATGCTGGTACCCGCATR	SELEX Nitta et al.(2015) gcm_3	0.763	0.763
gcm M10605_2.00	Drosophila melanogaster	NDNATGCGGGYNB	VNRCCCGCATNHN	Transfac Matys et al.(2006) I$GCM_01	0.763	0.763
GCM2 M02023_2.00	Taeniopygia guttata	NRTRHKGGYN	NRCCMDYAYN	PBM Weirauch et al.(2014) pTH9341	0.695	0.695
gcm2 M02026_2.00	Drosophila melanogaster	ATGCGGGY	RCCCGCAT	PBM Weirauch et al.(2014) pTH8361	0.695	0.695
GCM2 M03067_2.00	Homo sapiens	NATGCGGGYD	HRCCCGCATN	SELEX Jolma et al.(2013) GCM2_1	0.695	0.695
gcm2 M03767_2.00	Drosophila melanogaster	NATGCGGGYNNNRCCCGCATN	NATGCGGGYNNNRCCCGCATN	SELEX Nitta et al.(2015) gcm2_1	0.695	0.695
gcm2 M03768_2.00	Drosophila melanogaster	BATGCKGGTACCMGCATV	BATGCKGGTACCMGCATV	SELEX Nitta et al.(2015) gcm2_2	0.695	0.695
GCM2 M04881_2.00	Homo sapiens	RTGCGGGYN	NRCCCGCAY	SELEX Yin et al.(2017) GCM2_FL_HT-SELEX	0.695	0.695
GCM2 M10602_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GCMB_Q2	0.695	0.695
GCM2 M04882_2.00	Homo sapiens	ATRHKGGYN	NRCCMDYAT	SELEX Yin et al.(2017) GCM2_FL_Methyl-HT-SELEX	0.695	0.695
GCM1 M02021_2.00	Meleagris gallopavo	VTVNKGGYNN	NNRCCMNBAB	PBM Weirauch et al.(2014) pTH8653	0.678	0.678
Gcm1 M00168_2.00	Mus musculus	NVTRVGGGY	RCCCBYABN	PBM Badis et al.(2009) Gcm1_3732	0.661	0.661
Gcm1 M02022_2.00	Rattus norvegicus	NNRTRVGGGY	RCCCBYAYNN	PBM Weirauch et al.(2014) pTH9283	0.661	0.661
ENSTRUG00000003586 M02025_2.00	Takifugu rubripes	NRTRNGGGYN	NRCCCNYAYN	PBM Weirauch et al.(2014) pTH9357	0.661	0.661
XP_004449939.1 M02027_2.00	Dasypus novemcinctus	RTRSGGGY	RCCCSYAY	PBM Weirauch et al.(2014) pTH9259	0.661	0.661
GCM1 M02020_2.00	Homo sapiens	NVTVNGGGN	NCCCNBABN	PBM Weirauch et al.(2014) pTH7965	0.644	0.644
gcm2 M02024_2.00	Tetraodon nigroviridis	ATRCGGGY	RCCCGYAT	PBM Weirauch et al.(2014) pTH9386	0.644	0.644
GCM1 M03068_2.00	Homo sapiens	BATGCGGGTR	YACCCGCATV	SELEX Jolma et al.(2013) GCM1_1	0.644	0.644
GCM1 M03069_2.00	Homo sapiens	RTRYKGGYRCCMGYAN	NTRCKGGYRCCMRYAY	SELEX Jolma et al.(2013) GCM1_2	0.644	0.644
GCM1 M03070_2.00	Homo sapiens	BATGCGGGTRS	SYACCCGCATV	SELEX Jolma et al.(2013) GCM1_3	0.644	0.644
GCM1 M04883_2.00	Homo sapiens	RTGSGGGBV	BVCCCSCAY	SELEX Yin et al.(2017) GCM1_eDBD_HT-SELEX	0.644	0.644
GCM1 M05868_2.00	Homo sapiens	ATGCGGGYV	BRCCCGCAT	SMiLE-seq Isakova et al.(2017) GCM1	0.644	0.644
GCM1 M10603_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GCMA_Q4	0.644	0.644
GCM1 M10604_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GCM_Q2	0.644	0.644
GCM1 M04884_2.00	Homo sapiens	ATRNKGGYV	BRCCMNYAT	SELEX Yin et al.(2017) GCM1_eDBD_Methyl-HT-SELEX	0.644	0.644
For this family, TFs with SR scores > 0.607* will likely have a similar motif*