Ocbimv22027544m.g (Octopus bimaculoides)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 Ocbimv22027544m.g T198180_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.714 0.714
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.714 0.714
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.714 0.714
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.714 0.714
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.686 0.686
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.686 0.686
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.686 0.686
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.671 0.671
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.671 0.671
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.671 0.671
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.671 0.671
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.671 0.671
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.664 0.664
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.657 0.657
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.650 0.650
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.643 0.643
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.621 0.621
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.621 0.621
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22027544m.p GCM 51 191

Links

Other GCM family TFs
Other Octopus bimaculoides TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL014006 Aedes aegypti AAEL014006 I 0.000
AARA006439 Anopheles arabiensis AARA006439 I 0.000
AATE009845 Anopheles atroparvus AATE009845 I 0.000
ACHR005179 Anopheles christyi ACHR005179 I 0.000
ACOM029598 Anopheles coluzzii ACOM029598 I 0.000
ADAC010229 Anopheles darlingi ADAC010229 I 0.000
AEPI006519 Anopheles epiroticus AEPI006519 I 0.000
AFAF011359 Anopheles farauti AFAF011359 I 0.000
AFUN004445 Anopheles funestus AFUN004445 I 0.000
AGAP004517 Anopheles gambiae AGAP004517 I 0.000
AMEC013971 Anopheles melas AMEC013971 I 0.000
AMEM010701 Anopheles merus AMEM010701 I 0.000
AMIN004891 Anopheles minimus AMIN004891 I 0.000
AQUA009647 Anopheles quadriannulatus AQUA009647 I 0.000
ASIS018018 Anopheles sinensis ASIS018018 I 0.000
ASTEI04844 Anopheles stephensi ASTEI04844 I 0.000
BGIBMGA002238 Bombyx mori BGIBMGA002238 I 0.000
CLEC005464 Cimex lectularius CLEC005464 I 0.000
CPIJ008311 Culex quinquefasciatus CPIJ008311 I 0.000
CpipJ_CPIJ008311 Culex pipiens CpipJ_CPIJ008311 I 0.000
DAPPUDRAFT_331337 Daphnia pulex DAPPUDRAFT_331337 I 0.000
GA22020 Drosophila pseudoobscura FBgn0082005 I 0.000
GF16814 Drosophila ananassae FBgn0093835 I 0.000
GG11643 Drosophila erecta FBgn0103940 I 0.000
GH18734 Drosophila grimshawi FBgn0126201 I 0.000
GI22886 Drosophila mojavensis FBgn0145613 I 0.000
GL12325 Drosophila persimilis FBgn0149932 I 0.000
GM10707 Drosophila sechellia FBgn0165653 I 0.000
GD19684 Drosophila simulans FBgn0191175 I 0.000
GJ14181 Drosophila virilis FBgn0201398 I 0.000
GK13762 Drosophila willistoni FBgn0215770 I 0.000
GE25358 Drosophila yakuba FBgn0242436 I 0.000
hkb Drosophila melanogaster FBgn0261434 D 0.000
HMEL016959 Heliconius melpomene HMEL016959 I 0.000
KGM_06603 Danaus plexippus KGM_06603 I 0.000
LCUP000702 Lucilia cuprina LCUP000702 I 0.000
LDEC017422 Leptinotarsa decemlineata LDEC017422 I 0.000
MCINX014717 Melitaea cinxia MCINX014717 I 0.000
MDOA010102 Musca domestica MDOA010102 I 0.000
PHUM127400 Pediculus humanus PHUM127400 I 0.000
PPAI000954 Phlebotomus papatasi PPAI000954 I 0.000
SMAR000785 Strigamia maritima SMAR000785 I 0.000
TC010992 Tribolium castaneum TC010992 I 0.000
tetur02g06400 Tetranychus urticae tetur02g06400 I 0.000
tetur02g06440 Tetranychus urticae tetur02g06440 I 0.000