CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGLB002570
(
Biomphalaria glabrata
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03615 (GCM)
IPR003902
BGLB002570
T198230_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.657
0.657
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.657
0.657
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.657
0.657
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.657
0.657
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.621
0.621
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.621
0.621
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.621
0.621
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGLB002570-PA
GCM
7
146
HDPFELWPTGHSRRVYQADSDDARRHVSGWAMRNTNNHNALILKKSCLGVLVCSMDCMLESGRKVHLRPAICDKARRKQMGKPCPNPGCPGKLDLLSCRGHCGYPVTHFWRHVNRYVYFQAKGFHDHPRPEVKSLSEKGR
Links
Other
GCM
family TFs
Other
Biomphalaria glabrata
TFs
106 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22027544m.g
Octopus bimaculoides
Ocbimv22027544m.g
I
0.750
LotgiG112320
Lottia gigantea
LotgiG112320
I
0.729
LDEC012509
Leptinotarsa decemlineata
LDEC012509
I
0.707
YQE_03062
Dendroctonus ponderosae
YQE_03062
I
0.707
GB45031
Apis mellifera
GB45031
I
0.707
Hsal_09608--XP_393815.2_APIME
Harpegnathos saltator
Hsal_09608--XP_393815.2_APIME
I
0.700
TC014730
Tribolium castaneum
TC014730
I
0.700
CGI_10019940
Crassostrea gigas
CGI_10019940
I
0.700
Cflo_04549--XP_393815.2_APIME
Camponotus floridanus
Cflo_04549--XP_393815.2_APIME
I
0.700
ACEP23384
Atta cephalotes
ACEP23384
I
0.700
L798_07938
Zootermopsis nevadensis
L798_07938
I
0.700
SINV21711
Solenopsis invicta
SINV21711
I
0.693
tetur09g06060
Tetranychus urticae
tetur09g06060
I
0.686
CapteG133139
Capitella teleta
CapteG133139
I
0.686
PPAI003635
Phlebotomus papatasi
PPAI003635
I
0.686
HMEL005671
Heliconius melpomene
HMEL005671
I
0.679
KGM_05743
Danaus plexippus
KGM_05743
I
0.679
MCINX011946
Melitaea cinxia
MCINX011946
I
0.679
PHUM436840
Pediculus humanus
PHUM436840
I
0.679
AATE008476
Anopheles atroparvus
AATE008476
I
0.679
AFUN009837
Anopheles funestus
AFUN009837
I
0.679
AMAM003661
Anopheles maculatus
AMAM003661
I
0.679
AMIN006368
Anopheles minimus
AMIN006368
I
0.679
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.679
AFAF005680
Anopheles farauti
AFAF005680
I
0.679
BGIBMGA006182
Bombyx mori
BGIBMGA006182
I
0.679
ACHR001414
Anopheles christyi
ACHR001414
I
0.679
AEPI007160
Anopheles epiroticus
AEPI007160
I
0.679
ADIR000711
Anopheles dirus
ADIR000711
I
0.679
NV17454
Nasonia vitripennis
NV17454
I
0.671
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.671
ACUA009622
Anopheles culicifacies
ACUA009622
I
0.671
CLEC013329
Cimex lectularius
CLEC013329
I
0.671
ISCW022914
Ixodes scapularis
ISCW022914
I
0.671
DAPPUDRAFT_26189
Daphnia pulex
DAPPUDRAFT_26189
I
0.671
AGAP007783
Anopheles gambiae
AGAP007783
I
0.671
RPRC001299
Rhodnius prolixus
RPRC001299
I
0.664
GK23810
Drosophila willistoni
FBgn0225772
I
0.664
GF21907
Drosophila ananassae
FBgn0098907
I
0.664
ASIS002985
Anopheles sinensis
ASIS002985
I
0.664
AARA011980
Anopheles arabiensis
AARA011980
I
0.664
GG24019
Drosophila erecta
FBgn0116158
I
0.657
GL19218
Drosophila persimilis
FBgn0156817
I
0.657
CpipJ_CPIJ006640
Culex pipiens
CpipJ_CPIJ006640
I
0.657
fgenesh2_pg.scaffold_122000051
Branchiostoma floridae
fgenesh2_pg.scaffold_122000051
I
0.657
GA11505
Drosophila pseudoobscura
FBgn0071556
I
0.657
gcm
Drosophila melanogaster
FBgn0014179
D
0.657
GE10457
Drosophila yakuba
FBgn0228318
I
0.657
ACYPI34548
Acyrthosiphon pisum
ACYPI34548
I
0.657
CPIJ006640
Culex quinquefasciatus
CPIJ006640
I
0.657
GM12386
Drosophila sechellia
FBgn0167323
I
0.657
AMEC020313
Anopheles melas
AMEC020313
I
0.657
GCM1
Oryctolagus cuniculus
ENSOCUG00000009246
I
0.654
ADAC002327
Anopheles darlingi
ADAC002327
I
0.650
AALB008013
Anopheles albimanus
AALB008013
I
0.650
AAEL000623
Aedes aegypti
AAEL000623
I
0.650
AALB008012
Anopheles albimanus
AALB008012
I
0.643
MDOA004732
Musca domestica
MDOA004732
I
0.643
gcm1.S
Xenopus laevis
XB-GENE-6252686
I
0.638
GH11056
Drosophila grimshawi
FBgn0118537
I
0.636
ENSPMAG00000009211
Petromyzon marinus
ENSPMAG00000009211
I
0.636
CPIJ006639
Culex quinquefasciatus
CPIJ006639
I
0.636
CpipJ_CPIJ006639
Culex pipiens
CpipJ_CPIJ006639
I
0.636
MDOA003644
Musca domestica
MDOA003644
I
0.636
SCUD_0000094701
Schistosoma curassoni
SCUD_0000094701
N
0.633
LCUP008083
Lucilia cuprina
LCUP008083
I
0.629
ASIS021139
Anopheles sinensis
ASIS021139
I
0.629
Sjc_0024710
Schistosoma japonicum
Sjc_0024710
N
0.629
Smp_152660
Schistosoma mansoni
Smp_152660
N
0.629
GJ18313
Drosophila virilis
FBgn0205472
I
0.629
GJ17916
Drosophila virilis
FBgn0205084
I
0.629
GD22349
Drosophila simulans
FBgn0193756
I
0.629
GI17574
Drosophila mojavensis
FBgn0140318
I
0.629
GI11073
Drosophila mojavensis
FBgn0133835
I
0.629
SROB_0001396601
Schistosoma rodhaini
SROB_0001396601
N
0.629
GH10675
Drosophila grimshawi
FBgn0118156
I
0.629
ENSP00000368805-D1
Bos grunniens
ENSP00000368805-D1
I
0.623
ADIR000710
Anopheles dirus
ADIR000710
I
0.621
GM17569
Drosophila sechellia
FBgn0172477
I
0.621
AATE020589
Anopheles atroparvus
AATE020589
I
0.621
GE18856
Drosophila yakuba
FBgn0236239
I
0.621
GG10041
Drosophila erecta
FBgn0102353
I
0.621
gcm2
Drosophila melanogaster
FBgn0019809
D
0.621
ENSPFOG00000008781
Poecilia formosa
ENSPFOG00000008781
I
0.621
GF22779
Drosophila ananassae
FBgn0099773
I
0.621
ENSSHAG00000010590
Sarcophilus harrisii
ENSSHAG00000010590
I
0.621
csin110955
Clonorchis sinensis
csin110955
N
0.619
T265_07925
Opisthorchis viverrini
T265_07925
N
0.619
Gcm1
Rattus norvegicus
ENSRNOG00000007932
D
0.616
AAEL000631
Aedes aegypti
AAEL000631
I
0.614
ENSONIG00000009885
Oreochromis niloticus
ENSONIG00000009885
I
0.614
Sakowv30018670m.g
Saccoglossus kowalevskii
Sakowv30018670m.g
I
0.614
AFAF000663
Anopheles farauti
AFAF000663
I
0.614
GCM2
Ochotona princeps
ENSOPRG00000012641
I
0.614
ENSXMAG00000002726
Xiphophorus maculatus
ENSXMAG00000002726
I
0.614
GA17734
Drosophila pseudoobscura
FBgn0077744
I
0.614
GCM2
Anolis carolinensis
ENSACAG00000008677
I
0.614
Afo_R000272
Aptenodytes forsteri
Afo_R000272
I
0.614
GL18919
Drosophila persimilis
FBgn0156520
I
0.614
GCM2
Bos taurus
ENSBTAG00000018787
I
0.614
ENSPANG00000026314
Papio anubis
ENSPANG00000026314
I
0.609
Pvit_03812
Pogona vitticeps
Pvit_03812
I
0.609
ENSAPLG00000004160
Anas platyrhynchos
ENSAPLG00000004160
I
0.609
ENSFALG00000001854
Ficedula albicollis
ENSFALG00000001854
I
0.609
ENSMEUG00000004103
Macropus eugenii
ENSMEUG00000004103
I
0.609
Alligator_sinensis_CCG008975.1
Alligator sinensis
Alligator_sinensis_CCG008975.1
I
0.609