CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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csin108204
(
Clonorchis sinensis
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03615 (GCM)
IPR003902
csin108204
T198237_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.619
0.619
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.619
0.619
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.619
0.619
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.619
0.619
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
csin108204
GCM
193
330
FDTFTMWPQGHCRYAYQKSSSEGARRHASGWAMRNTNNHNALILKKSCLGVLLCSSKTCSLAMRPAICDKARRRQEGRACCMPNCTGIIYNQPCRGHSGFPVTHFWREHGDTVYFQAKGVHDHVRPDLKPVRDTAARR
Links
Other
GCM
family TFs
Other
Clonorchis sinensis
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
T265_00115
Opisthorchis viverrini
T265_00115
I
0.993
Smp_171130
Schistosoma mansoni
Smp_171130
I
0.888
D915_04811
Fasciola hepatica
D915_04811
I
0.888
SMTD_0000548601
Schistosoma mattheei
SMTD_0000548601
I
0.888
SMRZ_0001689701
Schistosoma margrebowiei
SMRZ_0001689701
I
0.888
ECPE_0000966901
Echinostoma caproni
ECPE_0000966901
I
0.866
Sjc_0090760
Schistosoma japonicum
Sjc_0090760
I
0.864
A_07498
Schistosoma haematobium
A_07498
I
0.851
DILT_0000717101
Diphyllobothrium latum
DILT_0000717101
I
0.675
PXEA_0000106701
Protopolystoma xenopodis
PXEA_0000106701
N
0.646
SSLN_0001903801
Schistocephalus solidus
SSLN_0001903801
I
0.644
MCOS_0000650801
Mesocestoides corti
MCOS_0000650801
I
0.642
ADIR000711
Anopheles dirus
ADIR000711
I
0.634
GF21907
Drosophila ananassae
FBgn0098907
I
0.627
AFAF005680
Anopheles farauti
AFAF005680
I
0.627
AMEM005966
Anopheles merus
AMEM005966
I
0.621
ACOM031025
Anopheles coluzzii
ACOM031025
I
0.621
GE10457
Drosophila yakuba
FBgn0228318
I
0.619
EmuJ_000821700
Echinococcus multilocularis
EmuJ_000821700
N
0.619
gcm
Drosophila melanogaster
FBgn0014179
D
0.619
TASK_0000418001
Taenia asiatica
TASK_0000418001
N
0.619
GM12386
Drosophila sechellia
FBgn0167323
I
0.619
ECANG7_01805
Echinococcus canadensis
ECANG7_01805
N
0.619
GI17574
Drosophila mojavensis
FBgn0140318
I
0.612
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.612
AMIN006368
Anopheles minimus
AMIN006368
I
0.612
AGAP007783
Anopheles gambiae
AGAP007783
I
0.612
AAEL000623
Aedes aegypti
AAEL000623
I
0.612
GJ17916
Drosophila virilis
FBgn0205084
I
0.612
GK23810
Drosophila willistoni
FBgn0225772
I
0.612
MDOA004732
Musca domestica
MDOA004732
I
0.612
AMAM003661
Anopheles maculatus
AMAM003661
I
0.612
GK23867
Drosophila willistoni
FBgn0225829
I
0.612
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.612
HelroG145480
Helobdella robusta
HelroG145480
I
0.612