csin108204 (Clonorchis sinensis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 csin108204 T198237_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.619 0.619
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.619 0.619
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.619 0.619
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.619 0.619
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin108204 GCM 193 330

Links

Other GCM family TFs
Other Clonorchis sinensis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000623 Aedes aegypti AAEL000623 I 0.612
ACOM031025 Anopheles coluzzii ACOM031025 I 0.621
ADIR000711 Anopheles dirus ADIR000711 I 0.634
AFAF005680 Anopheles farauti AFAF005680 I 0.627
AGAP007783 Anopheles gambiae AGAP007783 I 0.612
AMAM003661 Anopheles maculatus AMAM003661 I 0.612
AMEM005966 Anopheles merus AMEM005966 I 0.621
AMIN006368 Anopheles minimus AMIN006368 I 0.612
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.612
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.612
A_07498 Schistosoma haematobium A_07498 I 0.851
D915_04811 Fasciola hepatica D915_04811 I 0.888
DILT_0000717101 Diphyllobothrium latum DILT_0000717101 I 0.675
ECANG7_01805 Echinococcus canadensis ECANG7_01805 N 0.619
ECPE_0000966901 Echinostoma caproni ECPE_0000966901 I 0.866
EmuJ_000821700 Echinococcus multilocularis EmuJ_000821700 N 0.619
gcm Drosophila melanogaster FBgn0014179 D 0.619
GE10457 Drosophila yakuba FBgn0228318 I 0.619
GF21907 Drosophila ananassae FBgn0098907 I 0.627
GI17574 Drosophila mojavensis FBgn0140318 I 0.612
GJ17916 Drosophila virilis FBgn0205084 I 0.612
GK23810 Drosophila willistoni FBgn0225772 I 0.612
GK23867 Drosophila willistoni FBgn0225829 I 0.612
GM12386 Drosophila sechellia FBgn0167323 I 0.619
HelroG145480 Helobdella robusta HelroG145480 I 0.612
MCOS_0000650801 Mesocestoides corti MCOS_0000650801 I 0.642
MDOA004732 Musca domestica MDOA004732 I 0.612
PXEA_0000106701 Protopolystoma xenopodis PXEA_0000106701 N 0.646
Sjc_0090760 Schistosoma japonicum Sjc_0090760 I 0.864
Smp_171130 Schistosoma mansoni Smp_171130 I 0.888
SMRZ_0001689701 Schistosoma margrebowiei SMRZ_0001689701 I 0.888
SMTD_0000548601 Schistosoma mattheei SMTD_0000548601 I 0.888
SSLN_0001903801 Schistocephalus solidus SSLN_0001903801 I 0.644
T265_00115 Opisthorchis viverrini T265_00115 I 0.993
TASK_0000418001 Taenia asiatica TASK_0000418001 N 0.619