ECPE_0000966901 (Echinostoma caproni)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 ECPE_0000966901 T198244_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.622 0.622
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.622 0.622
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.622 0.622
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.622 0.622
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ECPE_0000966901-mRNA-1 GCM 260 397

Links

Other GCM family TFs
Other Echinostoma caproni TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
csin108204 Clonorchis sinensis csin108204 I 0.866
DILT_0000717101 Diphyllobothrium latum DILT_0000717101 I 0.723
gcm Drosophila melanogaster FBgn0014179 D 0.622
GI17574 Drosophila mojavensis FBgn0140318 I 0.622
GM12386 Drosophila sechellia FBgn0167323 I 0.622
GJ17916 Drosophila virilis FBgn0205084 I 0.622
ECANG7_01805 Echinococcus canadensis ECANG7_01805 N 0.619
EmuJ_000821700 Echinococcus multilocularis EmuJ_000821700 N 0.619
D915_04811 Fasciola hepatica D915_04811 I 0.926
MCOS_0000650801 Mesocestoides corti MCOS_0000650801 I 0.630
T265_00115 Opisthorchis viverrini T265_00115 I 0.867
PXEA_0000106701 Protopolystoma xenopodis PXEA_0000106701 N 0.677
SSLN_0001903801 Schistocephalus solidus SSLN_0001903801 I 0.655
A_07498 Schistosoma haematobium A_07498 I 0.830
Sjc_0090760 Schistosoma japonicum Sjc_0090760 I 0.864
Smp_171130 Schistosoma mansoni Smp_171130 I 0.867
SMRZ_0001689701 Schistosoma margrebowiei SMRZ_0001689701 I 0.867
SMTD_0000548601 Schistosoma mattheei SMTD_0000548601 I 0.867
TASK_0000418001 Taenia asiatica TASK_0000418001 N 0.619