SSLN_0001903801 (Schistocephalus solidus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 SSLN_0001903801 T198273_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.609 0.609
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.609 0.609
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.609 0.609
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SSLN_0001903801-mRNA-1 GCM 182 269

Links

Other GCM family TFs
Other Schistocephalus solidus TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPER_0003881901 Spirometra erinaceieuropaei SPER_0003881901 I 0.862
SPER_0003407301 Spirometra erinaceieuropaei SPER_0003407301 I 0.862
SPER_0003947201 Spirometra erinaceieuropaei SPER_0003947201 I 0.862
DILT_0000717101 Diphyllobothrium latum DILT_0000717101 I 0.747
MCOS_0000650801 Mesocestoides corti MCOS_0000650801 I 0.678
SMRZ_0001689701 Schistosoma margrebowiei SMRZ_0001689701 I 0.655
Smp_171130 Schistosoma mansoni Smp_171130 I 0.655
ECPE_0000966901 Echinostoma caproni ECPE_0000966901 I 0.655
SMTD_0000548601 Schistosoma mattheei SMTD_0000548601 I 0.655
D915_04811 Fasciola hepatica D915_04811 I 0.644
csin108204 Clonorchis sinensis csin108204 I 0.644
T265_00115 Opisthorchis viverrini T265_00115 I 0.632
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.632
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.621
ADIR000711 Anopheles dirus ADIR000711 I 0.621
MCINX011946 Melitaea cinxia MCINX011946 I 0.621
TsM_000180700 Taenia solium TsM_000180700 N 0.609
MDOA004732 Musca domestica MDOA004732 I 0.609
GE10457 Drosophila yakuba FBgn0228318 I 0.609
GD22349 Drosophila simulans FBgn0193756 I 0.609
GM12386 Drosophila sechellia FBgn0167323 I 0.609
GF21907 Drosophila ananassae FBgn0098907 I 0.609
HMEL005671 Heliconius melpomene HMEL005671 I 0.609
AALB008013 Anopheles albimanus AALB008013 I 0.609
gcm Drosophila melanogaster FBgn0014179 D 0.609
AFAF005680 Anopheles farauti AFAF005680 I 0.609
AEPI007160 Anopheles epiroticus AEPI007160 I 0.609
A_07498 Schistosoma haematobium A_07498 I 0.609