TRE_0001360101 (Trichobilharzia regenti)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 TRE_0001360101 T198279_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.736 0.736
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.736 0.736
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.736 0.736
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.736 0.736
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.681 0.681
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.681 0.681
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.681 0.681
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.615 0.615
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.615 0.615
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0001360101-mRNA-1 GCM 1 101

Links

Other GCM family TFs
Other Trichobilharzia regenti TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A_07498 Schistosoma haematobium A_07498 I 0.690
Smp_171130 Schistosoma mansoni Smp_171130 I 0.664
SMRZ_0001689701 Schistosoma margrebowiei SMRZ_0001689701 I 0.664
SMTD_0000548601 Schistosoma mattheei SMTD_0000548601 I 0.664
Sjc_0090760 Schistosoma japonicum Sjc_0090760 I 0.648
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.648
AFAF005680 Anopheles farauti AFAF005680 I 0.637
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.615
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.615
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.615