Alligator_sinensis_CCG001515.1 (Alligator sinensis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 Alligator_sinensis_CCG001515.1 T199500_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH

DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.942 0.942
TFCP2L1
M10609_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.942 0.942
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH

DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.942 0.942
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.918 0.918
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.918 0.918
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB

VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.918 0.918
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA

TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.851 0.851
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN

NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.745 0.745
UBP1
M10614_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.745 0.745
UBP1
M10615_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.745 0.745
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH

DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001515.1 Grainyhead 32 246

Links

Other Grainyhead family TFs
Other Alligator sinensis TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000002108 Ailuropoda melanoleuca ENSAMEG00000002108 I 0.841
ENSAMEG00000002341 Ailuropoda melanoleuca ENSAMEG00000002341 I 0.740
ENSAMEG00000005284 Ailuropoda melanoleuca ENSAMEG00000005284 I 0.938
Alligator_sinensis_CCG020804.1 Alligator sinensis Alligator_sinensis_CCG020804.1 N 0.702
Alligator_sinensis_CCG001336.1 Alligator sinensis Alligator_sinensis_CCG001336.1 I 0.755
Alligator_sinensis_CCG015050.1 Alligator sinensis Alligator_sinensis_CCG015050.1 I 0.788
ENSAPLG00000012157 Anas platyrhynchos ENSAPLG00000012157 I 0.793
ENSAPLG00000015648 Anas platyrhynchos ENSAPLG00000015648 I 0.962
ENSAPLG00000001472 Anas platyrhynchos ENSAPLG00000001472 I 0.726
TFCP2L1 Anolis carolinensis ENSACAG00000004268 I 0.957
TFCP2 Anolis carolinensis ENSACAG00000012289 I 0.851
UBP1 Anolis carolinensis ENSACAG00000013565 I 0.726
ENSACAG00000017482 Anolis carolinensis ENSACAG00000017482 I 0.721
Afo_R010616 Aptenodytes forsteri Afo_R010616 I 0.797
Afo_R010081 Aptenodytes forsteri Afo_R010081 I 0.726
Afo_R006827 Aptenodytes forsteri Afo_R006827 I 0.966
ENSAMXG00000016608 Astyanax mexicanus ENSAMXG00000016608 I 0.822
ENSP00000263707-D1 Bos grunniens ENSP00000263707-D1 I 0.933
ENSP00000283628-D2 Bos grunniens ENSP00000283628-D2 I 0.837
ENSP00000283628-D1 Bos grunniens ENSP00000283628-D1 I 0.788
TFCP2 Bos taurus ENSBTAG00000019312 I 0.837
TFCP2L1 Bos taurus ENSBTAG00000007765 I 0.938
UBP1 Bos taurus ENSBTAG00000003968 I 0.736
Brh_R004848 Buceros rhinoceros Brh_R004848 I 0.966
Brh_R008147 Buceros rhinoceros Brh_R008147 I 0.726
UBP1 Callithrix jacchus ENSCJAG00000012030 I 0.740
TFCP2 Callithrix jacchus ENSCJAG00000017599 I 0.841
TFCP2L1 Callithrix jacchus ENSCJAG00000013356 I 0.933
Aan_R009566 Calypte anna Aan_R009566 I 0.846
Aan_R003641 Calypte anna Aan_R003641 I 0.966
Aan_R001501 Calypte anna Aan_R001501 I 0.726
TFCP2 Canis familiaris ENSCAFG00000007831 I 0.841
TFCP2L1 Canis familiaris ENSCAFG00000004788 I 0.942
UBP1 Canis familiaris ENSCAFG00000004598 I 0.740
TFCP2 Cavia porcellus ENSCPOG00000007923 I 0.767
TFCP2L1 Cavia porcellus ENSCPOG00000011523 I 0.923
UBP1 Cavia porcellus ENSCPOG00000009270 I 0.740
Cmyd_10002729 Chelonia mydas Cmyd_10002729 I 0.845
Cmyd_10009085 Chelonia mydas Cmyd_10009085 I 0.966
ENSCSAG00000016679 Chlorocebus sabaeus ENSCSAG00000016679 I 0.938
ENSCSAG00000009395 Chlorocebus sabaeus ENSCSAG00000009395 I 0.740
ENSCSAG00000005909 Chlorocebus sabaeus ENSCSAG00000005909 I 0.841
tfcp2l1 Danio rerio ENSDARG00000029497 N 0.712
ubp1 Danio rerio ENSDARG00000018000 I 0.766
tfcp2 Danio rerio ENSDARG00000060306 I 0.822
ENSDNOG00000017309 Dasypus novemcinctus ENSDNOG00000017309 I 0.786
ENSDNOG00000018905 Dasypus novemcinctus ENSDNOG00000018905 I 0.764
ENSDNOG00000019550 Dasypus novemcinctus ENSDNOG00000019550 I 0.792
Tfcp2l1 Dipodomys ordii ENSDORG00000004265 I 0.788
Ubp1 Dipodomys ordii ENSDORG00000010133 I 0.784
UBP1 Echinops telfairi ENSETEG00000016510 I 0.788
UBP1 Equus caballus ENSECAG00000018555 I 0.793
TFCP2 Equus caballus ENSECAG00000020650 I 0.841
ENSECAG00000023454 Equus caballus ENSECAG00000023454 I 0.706
TFCP2L1 Equus caballus ENSECAG00000024837 I 0.923
TFCP2L1 Erinaceus europaeus ENSEEUG00000011003 I 0.825
TFCP2L1 Felis catus ENSFCAG00000012143 I 0.933
TFCP2 Felis catus ENSFCAG00000030292 I 0.841
UBP1 Felis catus ENSFCAG00000006123 I 0.793
ENSFALG00000004724 Ficedula albicollis ENSFALG00000004724 I 0.721
ENSFALG00000004962 Ficedula albicollis ENSFALG00000004962 I 0.731
ENSFALG00000013230 Ficedula albicollis ENSFALG00000013230 I 0.966
ENSGMOG00000007483 Gadus morhua ENSGMOG00000007483 I 0.803
TFCP2L1 Gallus gallus ENSGALG00000011635 I 0.971
ENSGALG00000011980 Gallus gallus ENSGALG00000011980 I 0.722
ENSGALG00000002235 Gallus gallus ENSGALG00000002235 D 0.851
ubp1 Gasterosteus aculeatus ENSGACG00000005520 I 0.707
tfcp2 Gasterosteus aculeatus ENSGACG00000010929 I 0.832
Gfo_R015659 Geospiza fortis Gfo_R015659 I 0.820
Gfo_R001955 Geospiza fortis Gfo_R001955 I 0.726
Gfo_R001211 Geospiza fortis Gfo_R001211 I 0.962
TFCP2L1 Gorilla gorilla ENSGGOG00000001680 I 0.942
TFCP2 Homo sapiens ENSG00000135457 D 0.841
TFCP2L1 Homo sapiens ENSG00000115112 D 0.938
UBP1 Homo sapiens ENSG00000153560 D 0.745
ENSSTOG00000012083 Ictidomys tridecemlineatus ENSSTOG00000012083 I 0.716
ENSSTOG00000013080 Ictidomys tridecemlineatus ENSSTOG00000013080 I 0.918
ENSSTOG00000009123 Ictidomys tridecemlineatus ENSSTOG00000009123 I 0.784
ENSLACG00000017694 Latimeria chalumnae ENSLACG00000017694 I 0.832
ENSLACG00000012609 Latimeria chalumnae ENSLACG00000012609 I 0.776
ENSLACG00000000718 Latimeria chalumnae ENSLACG00000000718 I 0.769
ENSLOCG00000002070 Lepisosteus oculatus ENSLOCG00000002070 I 0.774
ENSLOCG00000002718 Lepisosteus oculatus ENSLOCG00000002718 I 0.755
ENSLOCG00000004816 Lepisosteus oculatus ENSLOCG00000004816 I 0.812
ENSLAFG00000030783 Loxodonta africana ENSLAFG00000030783 I 0.788
TFCP2L1 Loxodonta africana ENSLAFG00000006873 I 0.933
TFCP2 Loxodonta africana ENSLAFG00000009123 I 0.841
ENSP00000263707 Macaca fascicularis ENSP00000263707 I 0.721
ENSP00000257915 Macaca fascicularis ENSP00000257915 I 0.784
ENSP00000283629 Macaca fascicularis ENSP00000283629 I 0.740
TFCP2 Macaca mulatta ENSMMUG00000000152 I 0.841
UBP1 Macaca mulatta ENSMMUG00000016917 I 0.740
TFCP2L1 Macaca mulatta ENSMMUG00000008829 I 0.894
TFCP2L1 Meleagris gallopavo ENSMGAG00000011889 I 0.966
UBP1 Meleagris gallopavo ENSMGAG00000011814 I 0.775
ENSMGAG00000016919 Meleagris gallopavo ENSMGAG00000016919 I 0.717
TFCP2L1 Microcebus murinus ENSMICG00000007161 I 0.933
ENSMODG00000002605 Monodelphis domestica ENSMODG00000002605 I 0.766
ENSMODG00000014457 Monodelphis domestica ENSMODG00000014457 I 0.713
TFCP2L1 Monodelphis domestica ENSMODG00000000229 I 0.957
ENSMPUG00000013008 Mustela putorius furo ENSMPUG00000013008 I 0.740
ENSMPUG00000001036 Mustela putorius furo ENSMPUG00000001036 I 0.861
Tcfcp2l1 Mus musculus ENSMUSG00000026380 D 0.923
Ubp1 Mus musculus ENSMUSG00000009741 I 0.742
Tfcp2 Mus musculus ENSMUSG00000009733 I 0.832
Myotis_brandtii_TFCP2L1_10019079 Myotis brandtii Myotis_brandtii_TFCP2L1_10019079 I 0.923
Myotis_brandtii_UBP1_10023937 Myotis brandtii Myotis_brandtii_UBP1_10023937 I 0.793
Myotis_brandtii_TFCP2_10023086 Myotis brandtii Myotis_brandtii_TFCP2_10023086 I 0.832
UBP1 Myotis lucifugus ENSMLUG00000010827 I 0.740
TFCP2L1 Myotis lucifugus ENSMLUG00000002967 I 0.812
TFCP2 Myotis lucifugus ENSMLUG00000013918 I 0.837
ENSNLEG00000004651 Nomascus leucogenys ENSNLEG00000004651 I 0.740
ENSNLEG00000000988 Nomascus leucogenys ENSNLEG00000000988 I 0.933
ENSNLEG00000017779 Nomascus leucogenys ENSNLEG00000017779 I 0.841
UBP1 Ochotona princeps ENSOPRG00000012913 I 0.736
TFCP2 Ochotona princeps ENSOPRG00000005747 I 0.820
Ogr01415 Ophisaurus gracilis Ogr01415 I 0.727
Ogr17000 Ophisaurus gracilis Ogr17000 I 0.823
Ogr16171 Ophisaurus gracilis Ogr16171 I 0.707
ENSONIG00000016680 Oreochromis niloticus ENSONIG00000016680 I 0.801
ENSONIG00000002320 Oreochromis niloticus ENSONIG00000002320 I 0.716
ENSONIG00000004467 Oreochromis niloticus ENSONIG00000004467 I 0.737
TFCP2L1 Ornithorhynchus anatinus ENSOANG00000007591 I 0.947
UBP1 Ornithorhynchus anatinus ENSOANG00000008309 I 0.716
TFCP2L1 Oryctolagus cuniculus ENSOCUG00000006877 I 0.942
TFCP2 Oryctolagus cuniculus ENSOCUG00000009026 I 0.721
UBP1 Oryctolagus cuniculus ENSOCUG00000011063 I 0.740
ubp1 Oryzias latipes ENSORLG00000011706 I 0.788
tfcp2 Oryzias latipes ENSORLG00000015644 I 0.817
TFCP2L1 Otolemur garnettii ENSOGAG00000012031 I 0.938
TFCP2 Otolemur garnettii ENSOGAG00000007969 I 0.841
UBP1 Otolemur garnettii ENSOGAG00000000962 I 0.736
ENSOARG00000017390 Ovis aries ENSOARG00000017390 I 0.832
ENSOARG00000015881 Ovis aries ENSOARG00000015881 I 0.779
ENSOARG00000013124 Ovis aries ENSOARG00000013124 I 0.942
UBP1 Pan troglodytes ENSPTRG00000014733 I 0.740
TFCP2L1 Pan troglodytes ENSPTRG00000012415 I 0.938
TFCP2 Pan troglodytes ENSPTRG00000004949 I 0.841
ENSPANG00000003702 Papio anubis ENSPANG00000003702 I 0.736
ENSPANG00000016702 Papio anubis ENSPANG00000016702 I 0.938
ENSPANG00000019744 Papio anubis ENSPANG00000019744 I 0.841
ENSPSIG00000015527 Pelodiscus sinensis ENSPSIG00000015527 I 0.793
ENSPSIG00000003763 Pelodiscus sinensis ENSPSIG00000003763 I 0.766
ENSPSIG00000008408 Pelodiscus sinensis ENSPSIG00000008408 I 0.971
ENSPMAG00000007229 Petromyzon marinus ENSPMAG00000007229 I 0.864
ENSPMAG00000003474 Petromyzon marinus ENSPMAG00000003474 I 0.822
ENSPMAG00000006794 Petromyzon marinus ENSPMAG00000006794 I 0.751
ENSPFOG00000011621 Poecilia formosa ENSPFOG00000011621 I 0.793
ENSPFOG00000008378 Poecilia formosa ENSPFOG00000008378 I 0.779
Pvit_12019 Pogona vitticeps Pvit_12019 I 0.800
Pvit_06471 Pogona vitticeps Pvit_06471 I 0.942
Pvit_07455 Pogona vitticeps Pvit_07455 I 0.856
ENSPPYG00000004522 Pongo abelii ENSPPYG00000004522 I 0.841
ENSPPYG00000012777 Pongo abelii ENSPPYG00000012777 I 0.938
ENSPPYG00000014030 Pongo abelii ENSPPYG00000014030 I 0.740
UBP1 Procavia capensis ENSPCAG00000008237 I 0.784
TFCP2 Procavia capensis ENSPCAG00000014181 I 0.707
TFCP2L1 Pteropus vampyrus ENSPVAG00000001653 I 0.743
TFCP2 Pteropus vampyrus ENSPVAG00000014772 I 0.776
UBP1 Pteropus vampyrus ENSPVAG00000004158 I 0.740
Ubp1 Rattus norvegicus ENSRNOG00000009729 I 0.740
Tfcp2l1 Rattus norvegicus ENSRNOG00000002414 I 0.928
Tfcp2 Rattus norvegicus ENSRNOG00000032395 I 0.824
ENSSHAG00000013877 Sarcophilus harrisii ENSSHAG00000013877 I 0.957
ENSSHAG00000005805 Sarcophilus harrisii ENSSHAG00000005805 I 0.707
ENSSHAG00000002647 Sarcophilus harrisii ENSSHAG00000002647 I 0.707
ENSSHAG00000002389 Sarcophilus harrisii ENSSHAG00000002389 I 0.760
ENSSHAG00000000901 Sarcophilus harrisii ENSSHAG00000000901 I 0.837
UBP1 Sorex araneus ENSSARG00000008670 I 0.784
UBP1 Sus scrofa ENSSSCG00000011235 I 0.793
TFCP2L1 Sus scrofa ENSSSCG00000015732 I 0.938
TFCP2L1 Taeniopygia guttata ENSTGUG00000004573 I 0.952
ENSTGUG00000015251 Taeniopygia guttata ENSTGUG00000015251 I 0.845
pou6f1 Takifugu rubripes ENSTRUG00000014900 I 0.827
ubp1 Takifugu rubripes ENSTRUG00000013570 I 0.779
ENSTSYG00000013882 Tarsius syrichta ENSTSYG00000013882 I 0.928
ubp1 Tetraodon nigroviridis ENSTNIG00000016974 I 0.793
tfcp2 Tetraodon nigroviridis ENSTNIG00000012528 I 0.768
TFCP2L1 Tursiops truncatus ENSTTRG00000003387 I 0.798
TFCP2 Tursiops truncatus ENSTTRG00000013836 I 0.825
UBP1 Tursiops truncatus ENSTTRG00000016791 I 0.784
Tal_R012945 Tyto alba Tal_R012945 I 0.726
Tal_R011103 Tyto alba Tal_R011103 I 0.966
Tal_R010177 Tyto alba Tal_R010177 I 0.846
TFCP2 Vicugna pacos ENSVPAG00000007617 I 0.832
AAI06326 Xenopus laevis AAI06326 I 0.798
AAP78771 Xenopus laevis AAP78771 I 0.790
tfcp2l1.S Xenopus laevis XB-GENE-6255174 I 0.908
tfcp2.L Xenopus laevis XB-GENE-865546 I 0.795
tfcp2l1.L Xenopus laevis XB-GENE-997202 I 0.913
tfcp2 Xenopus tropicalis XB-GENE-485720 I 0.805
ENSXMAG00000003023 Xiphophorus maculatus ENSXMAG00000003023 I 0.784
ENSXMAG00000005202 Xiphophorus maculatus ENSXMAG00000005202 I 0.808