Alligator_sinensis_CCG015050.1 (Alligator sinensis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 Alligator_sinensis_CCG015050.1 T199502_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA

TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.927 0.927
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN

NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.864 0.864
UBP1
M10614_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.864 0.864
UBP1
M10615_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.864 0.864
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH

DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.864 0.864
TFCP2
M03074_2.00
Homo sapiens
DAWCCGGTTY

RAACCGGWTH
SELEX
Jolma et al.(2013)
TFCP2_1
0.816 0.816
TFCP2
M03075_2.00
Homo sapiens
WCCGGWWHDAWCYGGW

WCCRGWTHDWWCCGGW
SELEX
Jolma et al.(2013)
TFCP2_2
0.816 0.816
TFCP2
M04889_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX
0.816 0.816
TFCP2
M04891_2.00
Homo sapiens
AWCYGGTTHNDACCGGTW

WACCGGTHNDAACCRGWT
SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX
0.816 0.816
TFCP2
M10610_2.00
Homo sapiens
CTKGKTHKDGC

GCHMDAMCMAG
Transfac
Matys et al.(2006)
V$CP2_01
0.816 0.816
TFCP2
M10611_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_02
0.816 0.816
TFCP2
M10612_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q4
0.816 0.816
TFCP2
M10613_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q6
0.816 0.816
TFCP2
M04890_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX
0.816 0.816
TFCP2
M04892_2.00
Homo sapiens
AWCCGGWTNDAWCCGGTT

AACCGGWTHNAACCGGWT
SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX
0.816 0.816
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH

DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.796 0.796
TFCP2L1
M10609_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.796 0.796
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH

DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.796 0.796
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.777 0.777
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.777 0.777
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB

VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.777 0.777
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG015050.1 Grainyhead 7 221

Links

Other Grainyhead family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action