CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_14440
(
Pogona vitticeps
)
Grainyhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04516 (CP2)
IPR007604
Pvit_14440
T199561_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GRHL1
M03071_2.00
Homo sapiens
RACYKGWHNDWCMGGTT
AACCKGWHNDWCMRGTY
SELEX
Jolma et al.(2013)
GRHL1_1
0.770
0.770
GRHL1
M03072_2.00
Homo sapiens
DAACCGGTTH
DAACCGGTTH
SELEX
Jolma et al.(2013)
GRHL1_2
0.770
0.770
GRHL1
M03073_2.00
Homo sapiens
HWAACCGGTTTD
HAAACCGGTTWD
SELEX
Jolma et al.(2013)
GRHL1_3
0.770
0.770
GRHL1
M04887_2.00
Homo sapiens
DAACCGGTTH
DAACCGGTTH
SELEX
Yin et al.(2017)
GRHL1_eDBD_HT-SELEX
0.770
0.770
GRHL1
M04888_2.00
Homo sapiens
DAACMKGTTH
DAACMKGTTH
SELEX
Yin et al.(2017)
GRHL1_eDBD_Methyl-HT-SELEX
0.770
0.770
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_14440
Grainyhead
218
434
FFPAELNLRMASMNSEDYVFESIAGNNFEYTLEASKSLRQKPGDNTMTYLNKGQFYPITLKEISGGEGIHQPISKVRSVIMVVFAEDKTREDQLRHWKYWHSRQHTAKQRCIDIGKKLPWHRCQNGAWQGLRSLFVFLHMPSKSKVFIAVNCLSTDFSSQKGVKGLPLNLQIDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKGK
Links
Other
Grainyhead
family TFs
Other
Pogona vitticeps
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy