tfcp2 (Xenopus tropicalis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 XB-GENE-485720 T199606_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA

TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.886 0.886
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN

NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.843 0.843
UBP1
M10614_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.843 0.843
UBP1
M10615_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.843 0.843
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH

DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.843 0.843
TFCP2
M03074_2.00
Homo sapiens
DAWCCGGTTY

RAACCGGWTH
SELEX
Jolma et al.(2013)
TFCP2_1
0.810 0.810
TFCP2
M03075_2.00
Homo sapiens
WCCGGWWHDAWCYGGW

WCCRGWTHDWWCCGGW
SELEX
Jolma et al.(2013)
TFCP2_2
0.810 0.810
TFCP2
M04889_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX
0.810 0.810
TFCP2
M04891_2.00
Homo sapiens
AWCYGGTTHNDACCGGTW

WACCGGTHNDAACCRGWT
SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX
0.810 0.810
TFCP2
M10610_2.00
Homo sapiens
CTKGKTHKDGC

GCHMDAMCMAG
Transfac
Matys et al.(2006)
V$CP2_01
0.810 0.810
TFCP2
M10611_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_02
0.810 0.810
TFCP2
M10612_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q4
0.810 0.810
TFCP2
M10613_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q6
0.810 0.810
TFCP2
M04890_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX
0.810 0.810
TFCP2
M04892_2.00
Homo sapiens
AWCCGGWTNDAWCCGGTT

AACCGGWTHNAACCGGWT
SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX
0.810 0.810
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH

DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.805 0.805
TFCP2L1
M10609_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.805 0.805
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH

DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.805 0.805
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.771 0.771
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.771 0.771
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB

VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH66130 Grainyhead 42 260

Links

Other Grainyhead family TFs
Other Xenopus tropicalis TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAI06326 Xenopus laevis AAI06326 I 0.976
Aan_R001501 Calypte anna Aan_R001501 I 0.819
Aan_R003641 Calypte anna Aan_R003641 I 0.805
Aan_R009566 Calypte anna Aan_R009566 I 0.881
AAP78771 Xenopus laevis AAP78771 I 0.976
Afo_R006827 Aptenodytes forsteri Afo_R006827 I 0.805
Afo_R010081 Aptenodytes forsteri Afo_R010081 I 0.819
Afo_R010616 Aptenodytes forsteri Afo_R010616 I 0.952
Alligator_sinensis_CCG001336.1 Alligator sinensis Alligator_sinensis_CCG001336.1 I 0.741
Alligator_sinensis_CCG001515.1 Alligator sinensis Alligator_sinensis_CCG001515.1 I 0.805
Alligator_sinensis_CCG015050.1 Alligator sinensis Alligator_sinensis_CCG015050.1 I 0.943
Alligator_sinensis_CCG020804.1 Alligator sinensis Alligator_sinensis_CCG020804.1 N 0.700
Brh_R004848 Buceros rhinoceros Brh_R004848 I 0.805
Brh_R008147 Buceros rhinoceros Brh_R008147 I 0.819
Cmyd_10002729 Chelonia mydas Cmyd_10002729 I 0.881
Cmyd_10009085 Chelonia mydas Cmyd_10009085 I 0.805
ENSACAG00000017482 Anolis carolinensis ENSACAG00000017482 I 0.733
ENSAMEG00000002108 Ailuropoda melanoleuca ENSAMEG00000002108 I 0.890
ENSAMEG00000002341 Ailuropoda melanoleuca ENSAMEG00000002341 I 0.838
ENSAMEG00000005284 Ailuropoda melanoleuca ENSAMEG00000005284 I 0.795
ENSAMXG00000016608 Astyanax mexicanus ENSAMXG00000016608 I 0.857
ENSAPLG00000001472 Anas platyrhynchos ENSAPLG00000001472 I 0.814
ENSAPLG00000012157 Anas platyrhynchos ENSAPLG00000012157 I 0.962
ENSAPLG00000015648 Anas platyrhynchos ENSAPLG00000015648 I 0.810
ENSCSAG00000005909 Chlorocebus sabaeus ENSCSAG00000005909 I 0.890
ENSCSAG00000009395 Chlorocebus sabaeus ENSCSAG00000009395 I 0.838
ENSCSAG00000016679 Chlorocebus sabaeus ENSCSAG00000016679 I 0.805
ENSDNOG00000017309 Dasypus novemcinctus ENSDNOG00000017309 I 0.943
ENSDNOG00000018905 Dasypus novemcinctus ENSDNOG00000018905 I 0.767
ENSDNOG00000019550 Dasypus novemcinctus ENSDNOG00000019550 I 0.800
ENSFALG00000004724 Ficedula albicollis ENSFALG00000004724 I 0.733
ENSFALG00000004962 Ficedula albicollis ENSFALG00000004962 I 0.833
ENSFALG00000013230 Ficedula albicollis ENSFALG00000013230 I 0.810
ENSGALG00000002235 Gallus gallus ENSGALG00000002235 D 0.886
ENSGALG00000011980 Gallus gallus ENSGALG00000011980 I 0.824
ENSGMOG00000007483 Gadus morhua ENSGMOG00000007483 I 0.819
ENSGMOG00000010354 Gadus morhua ENSGMOG00000010354 I 0.795
ENSLACG00000000718 Latimeria chalumnae ENSLACG00000000718 I 0.871
ENSLACG00000012609 Latimeria chalumnae ENSLACG00000012609 I 0.762
ENSLACG00000017694 Latimeria chalumnae ENSLACG00000017694 I 0.814
ENSLAFG00000030783 Loxodonta africana ENSLAFG00000030783 I 0.800
ENSLOCG00000002070 Lepisosteus oculatus ENSLOCG00000002070 I 0.743
ENSLOCG00000002718 Lepisosteus oculatus ENSLOCG00000002718 I 0.838
ENSLOCG00000004816 Lepisosteus oculatus ENSLOCG00000004816 I 0.867
ENSMODG00000002605 Monodelphis domestica ENSMODG00000002605 I 0.771
ENSMODG00000014457 Monodelphis domestica ENSMODG00000014457 I 0.705
ENSMPUG00000001036 Mustela putorius furo ENSMPUG00000001036 I 0.790
ENSMPUG00000013008 Mustela putorius furo ENSMPUG00000013008 I 0.838
ENSNLEG00000000988 Nomascus leucogenys ENSNLEG00000000988 I 0.800
ENSNLEG00000004651 Nomascus leucogenys ENSNLEG00000004651 I 0.838
ENSNLEG00000017779 Nomascus leucogenys ENSNLEG00000017779 I 0.890
ENSOARG00000013124 Ovis aries ENSOARG00000013124 I 0.795
ENSOARG00000015881 Ovis aries ENSOARG00000015881 I 0.829
ENSOARG00000017390 Ovis aries ENSOARG00000017390 I 0.881
ENSONIG00000002320 Oreochromis niloticus ENSONIG00000002320 I 0.819
ENSONIG00000016680 Oreochromis niloticus ENSONIG00000016680 I 0.848
ENSP00000257915 Macaca fascicularis ENSP00000257915 I 0.948
ENSP00000263707-D1 Bos grunniens ENSP00000263707-D1 I 0.786
ENSP00000283628-D1 Bos grunniens ENSP00000283628-D1 I 0.790
ENSP00000283628-D2 Bos grunniens ENSP00000283628-D2 I 0.886
ENSP00000283629 Macaca fascicularis ENSP00000283629 I 0.838
ENSPANG00000003702 Papio anubis ENSPANG00000003702 I 0.833
ENSPANG00000016702 Papio anubis ENSPANG00000016702 I 0.805
ENSPANG00000019744 Papio anubis ENSPANG00000019744 I 0.948
ENSPFOG00000008378 Poecilia formosa ENSPFOG00000008378 I 0.771
ENSPFOG00000011621 Poecilia formosa ENSPFOG00000011621 I 0.833
ENSPMAG00000003474 Petromyzon marinus ENSPMAG00000003474 I 0.795
ENSPMAG00000006794 Petromyzon marinus ENSPMAG00000006794 I 0.805
ENSPPYG00000004522 Pongo abelii ENSPPYG00000004522 I 0.890
ENSPPYG00000012777 Pongo abelii ENSPPYG00000012777 I 0.805
ENSPPYG00000014030 Pongo abelii ENSPPYG00000014030 I 0.838
ENSPSIG00000003763 Pelodiscus sinensis ENSPSIG00000003763 I 0.771
ENSPSIG00000008408 Pelodiscus sinensis ENSPSIG00000008408 I 0.800
ENSPSIG00000015527 Pelodiscus sinensis ENSPSIG00000015527 I 0.952
ENSSHAG00000000901 Sarcophilus harrisii ENSSHAG00000000901 I 0.890
ENSSHAG00000002389 Sarcophilus harrisii ENSSHAG00000002389 I 0.786
ENSSHAG00000002647 Sarcophilus harrisii ENSSHAG00000002647 I 0.752
ENSSHAG00000005805 Sarcophilus harrisii ENSSHAG00000005805 I 0.729
ENSSHAG00000013877 Sarcophilus harrisii ENSSHAG00000013877 I 0.805
ENSSTOG00000009123 Ictidomys tridecemlineatus ENSSTOG00000009123 I 0.948
ENSSTOG00000012083 Ictidomys tridecemlineatus ENSSTOG00000012083 I 0.762
ENSSTOG00000013080 Ictidomys tridecemlineatus ENSSTOG00000013080 I 0.786
ENSTGUG00000015251 Taeniopygia guttata ENSTGUG00000015251 I 0.950
ENSTSYG00000013882 Tarsius syrichta ENSTSYG00000013882 I 0.800
ENSXMAG00000003023 Xiphophorus maculatus ENSXMAG00000003023 I 0.781
ENSXMAG00000005202 Xiphophorus maculatus ENSXMAG00000005202 I 0.829
Gfo_R001211 Geospiza fortis Gfo_R001211 I 0.805
Gfo_R001955 Geospiza fortis Gfo_R001955 I 0.819
Gfo_R015659 Geospiza fortis Gfo_R015659 I 0.867
Myotis_brandtii_TFCP2L1_10019079 Myotis brandtii Myotis_brandtii_TFCP2L1_10019079 I 0.781
Myotis_brandtii_TFCP2_10023086 Myotis brandtii Myotis_brandtii_TFCP2_10023086 I 0.881
Myotis_brandtii_UBP1_10023937 Myotis brandtii Myotis_brandtii_UBP1_10023937 I 0.800
Ogr01415 Ophisaurus gracilis Ogr01415 I 0.819
Ogr16171 Ophisaurus gracilis Ogr16171 I 0.719
Ogr17000 Ophisaurus gracilis Ogr17000 I 0.795
pou6f1 Takifugu rubripes ENSTRUG00000014900 I 0.929
Pvit_06471 Pogona vitticeps Pvit_06471 I 0.790
Pvit_07455 Pogona vitticeps Pvit_07455 I 0.895
Pvit_07635 Pogona vitticeps Pvit_07635 I 0.710
Pvit_12019 Pogona vitticeps Pvit_12019 I 0.838
Tal_R010177 Tyto alba Tal_R010177 I 0.881
Tal_R011103 Tyto alba Tal_R011103 I 0.805
Tal_R012945 Tyto alba Tal_R012945 I 0.819
Tcfcp2l1 Mus musculus ENSMUSG00000026380 D 0.771
TFCP2 Tursiops truncatus ENSTTRG00000013836 I 0.877
TFCP2 Cavia porcellus ENSCPOG00000007923 I 0.919
TFCP2 Pteropus vampyrus ENSPVAG00000014772 I 0.967
tfcp2 Tetraodon nigroviridis ENSTNIG00000012528 I 0.924
Tfcp2 Rattus norvegicus ENSRNOG00000032395 I 0.886
TFCP2 Felis catus ENSFCAG00000030292 I 0.890
TFCP2 Callithrix jacchus ENSCJAG00000017599 I 0.948
TFCP2 Bos taurus ENSBTAG00000019312 I 0.886
Tfcp2 Mus musculus ENSMUSG00000009733 I 0.881
TFCP2 Anolis carolinensis ENSACAG00000012289 I 0.895
TFCP2 Vicugna pacos ENSVPAG00000007617 I 0.881
TFCP2 Macaca mulatta ENSMMUG00000000152 I 0.890
tfcp2 Oryzias latipes ENSORLG00000015644 I 0.848
TFCP2 Homo sapiens ENSG00000135457 D 0.890
TFCP2 Ochotona princeps ENSOPRG00000005747 I 0.881
tfcp2 Gasterosteus aculeatus ENSGACG00000010929 I 0.848
TFCP2 Equus caballus ENSECAG00000020650 I 0.890
TFCP2 Pan troglodytes ENSPTRG00000004949 I 0.890
TFCP2 Otolemur garnettii ENSOGAG00000007969 I 0.890
tfcp2 Danio rerio ENSDARG00000060306 I 0.852
TFCP2 Loxodonta africana ENSLAFG00000009123 I 0.890
TFCP2 Oryctolagus cuniculus ENSOCUG00000009026 I 0.886
TFCP2 Myotis lucifugus ENSMLUG00000013918 I 0.886
TFCP2 Canis familiaris ENSCAFG00000007831 I 0.890
tfcp2.L Xenopus laevis XB-GENE-865546 I 0.986
TFCP2L1 Taeniopygia guttata ENSTGUG00000004573 I 0.800
TFCP2L1 Anolis carolinensis ENSACAG00000004268 I 0.795
TFCP2L1 Sus scrofa ENSSSCG00000015732 I 0.795
tfcp2l1 Danio rerio ENSDARG00000029497 N 0.724
TFCP2L1 Oryctolagus cuniculus ENSOCUG00000006877 I 0.805
TFCP2L1 Ornithorhynchus anatinus ENSOANG00000007591 I 0.800
TFCP2L1 Meleagris gallopavo ENSMGAG00000011889 I 0.810
TFCP2L1 Monodelphis domestica ENSMODG00000000229 I 0.805
TFCP2L1 Macaca mulatta ENSMMUG00000008829 I 0.752
TFCP2L1 Equus caballus ENSECAG00000024837 I 0.790
TFCP2L1 Microcebus murinus ENSMICG00000007161 I 0.800
TFCP2L1 Erinaceus europaeus ENSEEUG00000011003 I 0.762
TFCP2L1 Loxodonta africana ENSLAFG00000006873 I 0.790
TFCP2L1 Gorilla gorilla ENSGGOG00000001680 I 0.805
TFCP2L1 Gallus gallus ENSGALG00000011635 I 0.814
TFCP2L1 Felis catus ENSFCAG00000012143 I 0.795
TFCP2L1 Otolemur garnettii ENSOGAG00000012031 I 0.805
TFCP2L1 Cavia porcellus ENSCPOG00000011523 I 0.795
Tfcp2l1 Rattus norvegicus ENSRNOG00000002414 I 0.790
TFCP2L1 Canis familiaris ENSCAFG00000004788 I 0.795
TFCP2L1 Bos taurus ENSBTAG00000007765 I 0.790
TFCP2L1 Pan troglodytes ENSPTRG00000012415 I 0.800
TFCP2L1 Homo sapiens ENSG00000115112 D 0.805
TFCP2L1 Callithrix jacchus ENSCJAG00000013356 I 0.795
tfcp2l1.L Xenopus laevis XB-GENE-997202 I 0.805
tfcp2l1.S Xenopus laevis XB-GENE-6255174 I 0.800
UBP1 Anolis carolinensis ENSACAG00000013565 I 0.843
UBP1 Felis catus ENSFCAG00000006123 I 0.795
UBP1 Bos taurus ENSBTAG00000003968 I 0.833
UBP1 Echinops telfairi ENSETEG00000016510 I 0.781
ubp1 Danio rerio ENSDARG00000018000 I 0.748
UBP1 Cavia porcellus ENSCPOG00000009270 I 0.838
UBP1 Canis familiaris ENSCAFG00000004598 I 0.838
UBP1 Equus caballus ENSECAG00000018555 I 0.795
ubp1 Tetraodon nigroviridis ENSTNIG00000016974 I 0.771
UBP1 Callithrix jacchus ENSCJAG00000012030 I 0.838
Ubp1 Dipodomys ordii ENSDORG00000010133 I 0.790
UBP1 Homo sapiens ENSG00000153560 D 0.843
UBP1 Procavia capensis ENSPCAG00000008237 I 0.798
UBP1 Tursiops truncatus ENSTTRG00000016791 I 0.790
UBP1 Pan troglodytes ENSPTRG00000014733 I 0.838
UBP1 Pteropus vampyrus ENSPVAG00000004158 I 0.838
ubp1 Takifugu rubripes ENSTRUG00000013570 I 0.810
Ubp1 Rattus norvegicus ENSRNOG00000009729 I 0.833
UBP1 Sorex araneus ENSSARG00000008670 I 0.790
UBP1 Taeniopygia guttata ENSTGUG00000001752 I 0.752
ubp1 Oryzias latipes ENSORLG00000011706 I 0.781
UBP1 Ochotona princeps ENSOPRG00000012913 I 0.833
ubp1 Gasterosteus aculeatus ENSGACG00000005520 I 0.810
UBP1 Meleagris gallopavo ENSMGAG00000011814 I 0.762
Ubp1 Mus musculus ENSMUSG00000009741 I 0.847
UBP1 Myotis lucifugus ENSMLUG00000010827 I 0.838
UBP1 Macaca mulatta ENSMMUG00000016917 I 0.838
UBP1 Ornithorhynchus anatinus ENSOANG00000008309 I 0.829
UBP1 Oryctolagus cuniculus ENSOCUG00000011063 I 0.843
UBP1 Otolemur garnettii ENSOGAG00000000962 I 0.833
UBP1 Sus scrofa ENSSSCG00000011235 I 0.790