PAT1 (Arabidopsis thaliana)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 AT5G48150 T199843_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G48150.1 GRAS 119 490
AT5G48150.2 GRAS 119 490
AT5G48150.3 GRAS 119 490
AT5G48150.4 GRAS 119 490

Links

Other GRAS family TFs
Other Arabidopsis thaliana TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27613.m000642 Ricinus communis 27613.m000642 N 0.772
29949.m000124 Ricinus communis 29949.m000124 N 0.821
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.737
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.778
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.745
SCL5 Arabidopsis thaliana AT1G50600 N 0.713
SCL21 Arabidopsis thaliana AT2G04890 N 0.729
Bo2g149670 Brassica oleracea Bo2g149670 N 0.962
Bo6g022330 Brassica oleracea Bo6g022330 N 0.713
Bo7g030310 Brassica oleracea Bo7g030310 N 0.723
Bo7g089080 Brassica oleracea Bo7g089080 N 0.924
Bo9g009240 Brassica oleracea Bo9g009240 N 0.940
Bo9g009260 Brassica oleracea Bo9g009260 N 0.949
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.742
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.707
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.978
Bra015156 Brassica rapa Bra015156 N 0.723
Bra018860 Brassica rapa Bra018860 N 0.713
Bra020715 Brassica rapa Bra020715 N 0.957
Bra026077 Brassica rapa Bra026077 N 0.726
Bra036185 Brassica rapa Bra036185 N 0.940
Bra037509 Brassica rapa Bra037509 N 0.922
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.725
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.984
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.728
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.984
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.780
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.812
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.762
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.743
Ca_09786 Cicer arietinum Ca_09786 N 0.816
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.737
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.786
Cla001429 Citrullus lanatus Cla001429 N 0.797
Cla004565 Citrullus lanatus Cla004565 N 0.713
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.808
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.808
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.715
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.718
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.851
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.713
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.737
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.832
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.816
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.821
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.835
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.751
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.824
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.737
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.722
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.727
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.768
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.776
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.770
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.756
MDP0000152670 Malus domestica MDP0000152670 N 0.821
MDP0000205236 Malus domestica MDP0000205236 N 0.726
MDP0000284679 Malus domestica MDP0000284679 N 0.726
MDP0000804652 Malus domestica MDP0000804652 N 0.824
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.816
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.786
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.726
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.731
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.808
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.737
PK09018.1 Cannabis sativa PK09018.1 N 0.789
PK15082.1 Cannabis sativa PK15082.1 N 0.726
Pm012019 Prunus mume Pm012019 N 0.753
Pm015021 Prunus mume Pm015021 N 0.835
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.759
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.840
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.837
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.729
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.756
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.843
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.736
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.984
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.808
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.745
TCM_002319 Theobroma cacao TCM_002319 N 0.835
TCM_030733 Theobroma cacao TCM_030733 N 0.772
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.729
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.938
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.715
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.835
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.767