CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo4g065860
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo4g065860
T199928_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo4g065860.1
GRAS
327
698
LRTLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYLADSLEARLAGTGTQIYTALSSKKTSASDMLKAYQTYISVCPFKKTAIIFANHSIMHLAPTDAKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGFRPAEGVNETGERLARYCQRYNVPFEYNGIAQKWETIKLEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIKPDVFIPAVLSGCYNAPFFVTRFREVLFHYSSLFDMCDTSLPRGDPMRIMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYRSKEFDVDQDGNWLLQGWKGRIVYASCT
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra028390
Brassica rapa
Bra028390
N
0.992
Thhalv10016312m.g
Eutrema salsugineum
Thhalv10016312m.g
N
0.913
Bostr.27991s0167
Boechera stricta
Bostr.27991s0167
N
0.872
Cagra.3264s0006
Capsella grandiflora
Cagra.3264s0006
N
0.867
Carubv10024938m.g
Capsella rubella
Carubv10024938m.g
N
0.864
SCL33
Arabidopsis thaliana
AT2G29060
N
0.864
Bo4g168030
Brassica oleracea
Bo4g168030
N
0.810
Bra035653
Brassica rapa
Bra035653
N
0.810
Thhalv10006868m.g
Eutrema salsugineum
Thhalv10006868m.g
N
0.800
Bra030688
Brassica rapa
Bra030688
N
0.799
Bo01118s010
Brassica oleracea
Bo01118s010
N
0.799
SCL14
Arabidopsis thaliana
AT1G07530
N
0.799
Bostr.25219s0207
Boechera stricta
Bostr.25219s0207
N
0.791
Cagra.1671s0373
Capsella grandiflora
Cagra.1671s0373
N
0.785
Carubv10008391m.g
Capsella rubella
Carubv10008391m.g
N
0.785
evm.TU.supercontig_81.126
Carica papaya
evm.TU.supercontig_81.126
N
0.701