CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra000012
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra000012
T199967_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra000012.1-P
GRAS
299
668
LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRSAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSIYGKPKVRVTGIEFPQPGFRPTQRVEETGERLAAYAEQFGVPFEYKAIAKKWDAVQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLRKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g031890
Brassica oleracea
Bo3g031890
N
0.995
SCL9
Arabidopsis thaliana
AT2G37650
N
0.957
fgenesh1_pg.C_scaffold_4001851
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001851
N
0.946
Bostr.23794s0312
Boechera stricta
Bostr.23794s0312
N
0.943
fgenesh1_pg.C_scaffold_4001848
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001848
N
0.938
Thhalv10016318m.g
Eutrema salsugineum
Thhalv10016318m.g
N
0.929
Carubv10025657m.g
Capsella rubella
Carubv10025657m.g
N
0.927
Cagra.18121s0006
Capsella grandiflora
Cagra.18121s0006
N
0.927
gene18433-v1.0-hybrid
Fragaria vesca
gene18433-v1.0-hybrid
N
0.739
Pm002685
Prunus mume
Pm002685
N
0.727
Ciclev10011141m.g
Citrus clementina
Ciclev10011141m.g
N
0.727
orange1.1g004514m.g
Citrus sinensis
orange1.1g004514m.g
N
0.727
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.725
PRUPE_ppa001883mg
Prunus persica
PRUPE_ppa001883mg
N
0.724
SapurV1A.0001s1700
Salix purpurea
SapurV1A.0001s1700
N
0.723
Cucsa.175500
Cucumis sativus
Cucsa.175500
N
0.716
TCM_021920
Theobroma cacao
TCM_021920
N
0.716
POPTR_0006s08690
Populus trichocarpa
POPTR_0006s08690
N
0.708
Cla018179
Citrullus lanatus
Cla018179
N
0.705
Lus10024384.g
Linum usitatissimum
Lus10024384.g
N
0.703
Eucgr.A01279
Eucalyptus grandis
Eucgr.A01279
N
0.703
29767.m000200
Ricinus communis
29767.m000200
N
0.702